Job Description P0AFA5 Confidence 99.94% Date Thu Jan 5 11:25:44 GMT 2012 Rank 5 Aligned Residues 225 % Identity 20% Template c2z86D_ PDB info PDB header:transferase Chain: D: PDB Molecule:chondroitin synthase; PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp Resolution 2.40 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	Y	K	P	D	E	K	P	L	A	I	M	V	P	A	W	N	E	T	G	V	I	G	N	M	A	E	L	A	A	T	T	L	D	Y	E	N	Y	H	I	F	V	G	T	Y	P	N	D	P	D	T	Q	R	D	V	D	E	V	C	A	R	F	P	N	V	H	K	V	V	C	A	R	P	G	P	T	S	K	A
Query Conservation
Alig confidence																																																																		.	.
Template Conservation																																																																		.	.
Template Sequence		K	R	K	E	L	I	I	D	G	L	S	I	V	I	P	T	Y	N	R	A	K	I	L	A	I	T	L	A	C	L	C	N	Q	K	T	I	Y	D	Y	E	V	I	V	A	D	D	G	S	K	E	N	I	E	E	I	V	R	E	F	E	S	L	L	N	.	.	I	K	Y	V	R	Q	K	D	Y	G	Y	Q	L	C
Template Known Secondary structure																			S														T				S	S										S		S	S									T	T	T	T	S		.	.										S	S
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																																									.	.	.																																	.	.	.	.	.	.
Query SS confidence																																									.	.	.																																	.	.	.	.	.	.
Query Sequence		D	C	L	N	N	V	L	D	A	I	T	Q	F	E	R	S	A	N	F	A	F	A	G	F	I	L	H	D	A	E	D	V	I	S	P	M	E	L	R	.	.	.	L	F	N	Y	L	V	E	R	K	D	L	I	Q	I	P	V	Y	P	F	E	R	E	W	T	H	F	T	S	M	T	Y	I	.	.	.	.	.	.
Query Conservation																																									.	.	.																																	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																		.	.	.																									.								.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.																																													.
Template Sequence		A	V	R	N	L	G	L	R	A	A	K	Y	N	.	.	.	.	.	.	.	.	.	Y	V	A	I	L	D	C	D	M	A	P	N	P	L	W	V	Q	S	Y	M	E	L	L	A	V	D	D	N	V	A	L	I	G	P	R	K	Y	I	D	T	S	K	H	T	.	Y	L	D	F	L	S	Q	K	S	L	I	N	E
Template Known Secondary structure													S	S	.	.	.	.	.	.	.	.	.							T	T					T	T													T	T										B			T	T			.								T	T	G	G	G	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.																																													.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.										.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290
																						213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	F	S	E	L	H	G	K	D	V	P	V	R	E	A	L	A	G	Q	V	P	S	A	G	V	G	T	C	F	S	R	R	A	V	T	A	L	L	A	D	G	D	G	I	A	F	D	V	Q	S	L	.	.	.	T	E	D	Y	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.									.	.	.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		I	P	E	I	I	T	N	N	Q	V	A	G	K	V	E	Q	N	K	S	V	D	W	R	I	E	H	F	K	N	T	D	N	L	R	L	C	N	T	P	F	R	F	F	S	G	G	N	V	A	F	A	K	K	W	L	F	R	A	.	.	.	.	.	.	G	W	F	D	E	E	F	T	H	W	G	G	E	D	N	E
Template Known Secondary structure		S		B							S	S	S																	T	T	T	T	T	T	T		S		G	G	G	G			T	T						G	G	G					.	.	.	.	.	.					T	T		S	S	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.							.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	F	R	L	K	E	K	G	M	T	E	I	F	V	R	F	P	V	V	D	E	A	K	E	R	E	Q	R	K	F	L	Q	H	A	R	T	S	N	M	I	C	V	R	E	Y	F	P	D	T	F	S	T	A	V	R	Q	K
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	G	Y	R	L	Y	R	E	G	C	Y	F	R	S	V	E	G	A	M	A	Y	H	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	G	T	V	Q	L	L	Q	Q	K
Template Known Secondary structure									T	T							G	G	G							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.																								.	390	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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