Job Description P0AFA5 Confidence 99.94% Date Thu Jan 5 11:25:44 GMT 2012 Rank 7 Aligned Residues 208 % Identity 12% Template c2ffuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 Resolution 1.64 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																													.																				.	.
Query SS confidence																													.																				.	.
Query Sequence		Y	P	R	M	S	Y	R	E	L	Y	K	P	D	E	K	P	L	A	I	M	V	P	A	W	N	E	T	.	G	V	I	G	N	M	A	E	L	A	A	T	T	L	D	Y	E	N	Y	.	.	H	I	F	V	G	T	Y	P	N	D	P	D	T	Q	R	D	V	D	E	V	C	A	R	F	P	N	V	H	K	V	V
Query Conservation																													.																				.	.
Alig confidence																													.														.						.	.																								.	.	.	.	.
Template Conservation																																											.																															.	.	.	.	.
Template Sequence		R	H	D	Q	C	Q	R	K	Q	W	R	V	D	L	P	A	T	S	V	V	I	T	F	H	N	E	A	R	S	A	L	L	R	T	V	V	S	V	L	K	K	.	S	P	P	H	L	I	K	E	I	I	L	V	D	D	Y	S	N	D	P	E	D	G	A	L	L	G	K	I	E	K	.	.	.	.	.	V	R	V
Template Known Secondary structure		S		G	G	G	G	G					S	S											S	S																	.	S		G	G	G										S		S		T					G	G	G	G	B	T	T	.	.	.	.	.
Template Predicted Secondary structure																																											.																															.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.						.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		C	A	R	P	G	P	T	S	K	A	D	C	L	N	N	V	L	D	A	I	T	Q	F	E	R	S	A	N	F	A	F	A	G	F	I	L	H	D	A	E	D	V	I	S	P	M	E	L	R	.	.	L	F	N	Y	L	V	E	R	K	D	L	I	Q	I	P	V	Y	P	F	E	R	E	W	T	H	F	T	S	M
Query Conservation																																																			.	.
Alig confidence																									.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																									.	.	.	.	.	.	.	.	.
Template Sequence		L	R	N	D	R	R	E	G	L	M	R	S	R	V	R	G	A	D	A	A	Q	A	K	.	.	.	.	.	.	.	.	.	V	L	T	F	L	D	S	H	C	E	C	N	E	H	W	L	E	P	L	L	E	R	V	A	E	D	R	T	R	V	V	S	P	I	I	D	V	I	N	M	D	N	F	Q	Y	V	G	A
Template Known Secondary structure					S	S																	S	S	.	.	.	.	.	.	.	.	.							S	S					T	T													T	T												T	T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.										.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		210																		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.																															.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.																															.	.	.
Query Sequence		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	I	D	E	F	S	E	L	H	G	K	D	V	P	V	R	E	A	L	A	G	Q	V	P	.	.	.	S	A	G	V	G	T	C	F	S	R	R	A	V	T	A	L	L	A	D	G	D	G	I	A	F	D	V	Q	S	L	.	.	.	T	E
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.																															.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.										.	.	.																	.	.	.	.	.	.									.	.	.
Template Conservation																													.	.	.	.	.	.																													.	.	.	.	.	.
Template Sequence		S	A	D	L	K	G	G	F	D	W	N	L	V	F	K	W	D	Y	M	T	P	E	Q	R	R	S	R	.	.	.	.	.	.	Q	G	N	P	V	A	P	I	K	T	P	M	I	A	G	G	L	F	V	M	D	K	F	Y	F	E	E	L	.	.	.	.	.	.	G	K	Y	D	M	M	M	D	V	W	G	G	E
Template Known Secondary structure			S	S							T	T																T	.	.	.	.	.	.	S	S		T	T	S					S	S			S	S	S											T	.	.	.	.	.	.	T				T	T			S	S	S	S
Template Predicted Secondary structure																													.	.	.	.	.	.																													.	.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.							.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.							.	.	.	.	.	.	.	.	330	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	D	I	G	F	R	L	K	E	K	G	M	T	E	I	F	V	R	F	P	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	E	I	S	F	R	V	W	Q	C	G	G	S	L	E	I	I	P	C	S	R	V
Template Known Secondary structure												T	T
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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