Job Description P0AFA5 Confidence 99.94% Date Thu Jan 5 11:25:44 GMT 2012 Rank 3 Aligned Residues 220 % Identity 12% Template c1xhbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.																				.	.															.
Query SS confidence																														.																				.	.															.
Query Sequence		R	Y	P	R	M	S	Y	R	E	L	Y	K	P	D	E	K	P	L	A	I	M	V	P	A	W	N	E	T	.	G	V	I	G	N	M	A	E	L	A	A	T	T	L	D	Y	E	N	Y	.	.	H	I	F	V	G	T	Y	P	N	D	P	D	T	Q	.	R	D	V	D	E	V	C	A	R	F	P	N	V	H	K
Query Conservation																														.																				.	.															.
Alig confidence																														.														.						.	.															.													.
Template Conservation																																												.																																			.
Template Sequence		V	R	L	E	G	C	K	T	K	V	Y	P	D	N	L	P	T	T	S	V	V	I	V	F	H	N	E	A	W	S	T	L	L	R	T	V	H	S	V	I	N	R	.	S	P	R	H	M	I	E	E	I	V	L	V	D	D	A	S	E	R	D	F	L	K	R	P	L	E	S	Y	V	K	K	L	K	V	.	P	V
Template Known Secondary structure			S		G	G	G	G	T					S												S	S																S	.	S		G	G	G										S				G	G	G	T									S	S	S	S	.
Template Predicted Secondary structure																																												.																																			.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		V	V	C	A	R	P	G	P	T	S	K	A	D	C	L	N	N	V	L	D	A	I	T	Q	F	E	R	S	A	N	F	A	F	A	G	F	I	L	H	D	A	E	D	V	I	S	P	M	E	L	R	.	.	L	F	N	Y	L	V	E	R	K	D	L	I	Q	I	P	V	Y	P	F	E	R	E	W	T	H	F	T
Query Conservation																																																					.	.
Alig confidence																											.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																											.	.	.	.	.	.	.	.	.
Template Sequence		H	V	I	R	M	E	Q	R	S	G	L	I	R	A	R	L	K	G	A	A	V	S	R	G	Q	.	.	.	.	.	.	.	.	.	V	I	T	F	L	D	A	H	C	E	C	T	A	G	W	L	E	P	L	L	A	R	I	K	H	D	R	R	T	V	V	C	P	I	I	D	V	I	S	D	D	T	F	E	Y	M
Template Known Secondary structure							S	S																	S	S	.	.	.	.	.	.	.	.	.							S	S					T	T													T	T												S	S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.										.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.															.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.	270
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Query Sequence		S	M	T	Y	I	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	E	L	H	G	K	D	V	P	V	R	E	A	L	A	G	Q	V	P	S	A	G	V	G	T	C	F	S	R	R	A	V	T	A	L	L	A	D	G	D	G	I	A	F	D	V	Q	S	L	.	.	.	T	E	D	Y	D	I
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.									.	.	.
Template Conservation																																																											.	.	.	.	.	.
Template Sequence		A	G	S	D	M	T	Y	G	G	F	N	W	K	L	N	F	R	W	Y	P	V	P	Q	R	E	M	D	R	R	K	G	D	R	T	L	P	V	R	T	P	T	M	A	G	G	L	F	S	I	D	R	D	Y	F	Q	E	I	.	.	.	.	.	.	G	T	Y	D	A	G	M	D	I	W	G	G	E	N	L	E	I
Template Known Secondary structure					T	T							T	T																T	T	T		T	T	S					S	B			S	S	S											T	.	.	.	.	.	.	T	S			T	T	S		T	T					S
Template Predicted Secondary structure																																																											.	.	.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.							.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	R	L	K	E	K	G	M	T	E	I	F	V	R	F	P	V	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	F	R	I	W	Q	C	G	G	T	L	E	I	V	T	C	S	H	V	G
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions