Return to main results Retrieve Phyre Job Id

Job DescriptionP45527
Confidence82.95%DateThu Jan 5 12:02:54 GMT 2012
Rank326Aligned Residues129
% Identity15%Templated1bxna1
SCOP infoTIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20..... ....30.........40.........50.... .....60.........70........
Predicted Secondary structure 








....














.







Query SS confidence 





















. . . .




























.























Query Sequence  LCPAGNLPALKAAIENGADAVY. . . . IGLKDDTNARHFAGLNFTEKKLQEAVSFV. HQHRRKLHIAINTFAHPDGYARWQ
Query Conservation 


 
 

   

  



 

.... 
       
           
 
     .   
  
 
 

 
          
Alig confidence 





















....











......










.











..









Template Conservation 


   
 
 

 
 



 




 
      
   
......
 
  


  
   

    
  
..


     
 
Template Sequence  LSGRNYGRVVYEGLKGGLDFMKDDENINSQPFMHWRDR. . . . . . FLFVMDAVNKASAATGEVKGSYLN. . VTAGTMEEMY
Template Known Secondary structure 

TT
S

TT
SS
TTS
......TS

..


SS
Template Predicted Secondary structure 

















......



..




Template SS confidence 















































































   183......190.........200.........210.........220 .........230.........240.... .....250....
 
   7980.........90....... ..100..... ....110........ .120.........130.........140.
Predicted Secondary structure 





......






.........








Query SS confidence 


















. . . .







. .












. . . . . . . . .






















Query Sequence  RAVDMAAQLGADALILADL. . . . AMLEYAAE. . RYPHIERHVSVQA. . . . . . . . . SATNEEAINFYHRHFDVARVVLP
Query Conservation    
  
   
 
 


 
 ....
       ..      
  
   .........

 
           
   
 

Alig confidence 















.

....







..












.........






















Template Conservation   

  
   
   


.    
   
  

       


 

 
  

       


  

 

 





     
Template Sequence  RRAEFAKSLGSVIIMV. DLIVGWTCIQSMSNWCRQNDMILHLHRAGHGTYTRQKNHGVSFRVIAKWLRLAGVDHMHTG
Template Known Secondary structure  TT
S.GGG
TTT

TTTS
TTSS

T
S

Template Predicted Secondary structure 


.





















Template SS confidence 













































































   255....260.........270 .........280.........290.........300.........310.........320.........330.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions