 |
Job Description | P45527 | Confidence | 77.65% | Date | Thu Jan 5 12:02:54 GMT 2012 |
Rank | 387 | Aligned Residues | 113 |
% Identity | 12% | Template | c2p3eA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:diaminopimelate decarboxylase; |
PDBTitle: crystal structure of aq1208 from aquifex aeolicus
|
Resolution | 1.99 Å |
|
 |
  |   |
42 | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | T | E | K | K | L | Q | E | A | V | S | F | V | H | Q | H | . |
. |
R | R | K | L | H | I | A | I | N | T | F | A | H | P | D | G | Y | A | R | W | Q | R | A | V | D | M | A | A | Q | L | G | A | D | A | L | I | L | A | D | L | A | M | L | E | Y | A | A | E | R | Y | P | H | I | E | R | H | V | S | V | Q | A | S |
Query Conservation |   |
  |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   | . | . |
|   |   |
|   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |
|   |
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |   |   |   | . | . | . | . | . | . | . |
|   |   |   |
|   |   |   |
|   | . |
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |
| . |
|   |   |
|   |
Template Sequence |   |
Y | S | S | N | F | I | K | E | R | F | E | A | Y | R | K | A | F | P | D | A | L | I | C | Y | A | V | K | A | N | F | N | P | H | . |
. |
. |
. |
. |
. |
. |
L | V | K | L | L | G | E | L | G | A | . |
G | A | D | I | V | S | G | G | E | L | Y | L | A | K | K | A | G | I | P | P | E | R | I | . |
V | Y | A | G | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | T | T | S |  |  |  |  |  | G | G | G |
|
|
|  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  | T | T |
| . |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  | T | T |
|
| G | G | G |  | . |  |  |
| S | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  | . |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
39 | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 80 | . | |
. | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | |
. | . | . | . | . |
  |
  |   |
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | T | N | E | E | A | I | N | F | Y | H | R | H | F | D | V | A | R | V | V | L | P | R | V | L | S | I | H | Q | V | K | Q | L | A | R | V | T | P | V | P | L | E | V | F | A |
Query Conservation |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|   |
|
|   |
|   |
|
|   |   |
|   |   |   |   |   |   |   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |
|   |   |
| . |   |   |   |   |   |   |   |   |   |
|
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|
Template Sequence |   |
G | K | T | E | K | E | L | T | D | A | . |
V | D | S | E | I | L | M | F | N | V | E | S | R | Q | E | L | D | V | L | N | E | I | A | G | K | L | G | K | K | A | R | I | A | I |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |  | . |  |  | T | T |
| S |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  | . |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
110 | . | . | . | . | . | . | . | . | . | |
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|