 |
Job Description | P45527 | Confidence | 87.08% | Date | Thu Jan 5 12:02:54 GMT 2012 |
Rank | 274 | Aligned Residues | 105 |
% Identity | 21% | Template | c2gjlA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:hypothetical protein pa1024; |
PDBTitle: crystal structure of 2-nitropropane dioxygenase
|
Resolution | 2.00 Å |
|
 |
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | A | G | N | L | P | A | L | K | A | A | I | E | N | G | A | D | A | V | Y | I | G | L | K | D | D | T | N | A | R | H | F | A | G | L | N | F | T | E | K | K | L | Q | E | A | V | S | F | V | H | Q | H | R | R | K | L | H | I | A | I | N | T | F | A | H | P | D | G | Y | A | R | W | Q | R | A | V | D | M | A | A |
Query Conservation |   |
|   |
|   |
|
|   |   |   |
|
|   |   |
|
|
|
|   |
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |
|   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |
|   | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |
|   |
Template Sequence |   |
P | V | P | Y | A | E | Y | R | A | A | I | I | E | A | G | I | R | V | V | E | T | A | G | N | D | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | E | H | I | A | E | F | R | R | H | G | V | K | V | I | H | K | C | T | A | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | H | A | L | K | A | E |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  | S |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  | S | S |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | 130 | . | . | . | . | . |
  |
  |   |
86 | . | . | . | 90 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | L | G | A | D | A | L | I | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | D | L | A | M | L | E | Y | A | A | E | R | Y | P | H | I | E | R | H | V | S | V | Q | A | S | A | T | N | E | E | A | I | N | F | Y | H | R | H | F | D | V | A | R | V | V | L |
Query Conservation |   |
  |   |
|   |
|   |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|   |
|
|   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   | . |   |
|
|
|
|
|
|
|
| . | . |
|   |   |   |   |
|   |
|   |
|
| . |
|
|
|
|
|
|
|   |
|
Template Sequence |   |
R | L | G | V | D | A | V | S | I | D | G | F | E | C | A | G | H | P | G | E | D | D | I | P | G | L | V | L | L | P | A | A | A | N | R | L | . |
R | V | P | I | I | A | S | G | G | . |
. |
F | A | D | G | R | G | L | V | A | A | L | . |
A | L | G | A | D | A | I | N | M |
Template Known Secondary structure |   |
 | T | T |
| S |  |  |  |  |  |
| T | T |
| S | B |
|
|
| S | S |
|
|
|  |  |  |  |  |  |  |  |  | T | T |
| . |
| S |
|  |  |  |  | S | S | . | . |
|
| S |  |  |  |  |  |  |  |  | . |  |  | T |
| S |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |
|
| . | . |
|
|
|  |  |  |  |  |  |  |  | . |  |
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
136 | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | |
. | . | . | . | . | . | . | . | 180 | |
|
. | . | . | . | . | . | . | . | . | 190 | . | |
. | . | . | . | . | . | . | . | 200 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|