 |
Job Description | P45527 | Confidence | 72.90% | Date | Thu Jan 5 12:02:54 GMT 2012 |
Rank | 435 | Aligned Residues | 52 |
% Identity | 15% | Template | c1djnB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:trimethylamine dehydrogenase; |
PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)
|
Resolution | 2.20 Å |
|
 |
  |   |
44 | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | |
|
|
|
. | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
E | K | K | L | Q | E | A | V | S | F | V | H | Q | H | R | R | K | L | H | I | A | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | T | F | A | H | P | D | G | Y | A | R | W | Q | R | A | V | D | . |
. |
. |
. |
M | A | A | Q | L | G |
Query Conservation |   |
  |   |   |
|   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   | . | . | . | . |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |
|
|
Template Sequence |   |
V | R | N | L | K | A | M | T | D | E | V | H | K | Y | G | A | L | A | G | V | E | L | W | Y | G | G | A | H | A | P | N | M | E | S | R | A | T | P | R | G | P | S | Q | Y | A | S | E | F | E | T | L | S | Y | C | K | E | M | D | L | S | D | I | A | Q | V | Q | Q | F | Y | V | D | A | A | K | R | S | R | D | A | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |
|
| G | G | G | S |
|
| T | T | T |
|
|
|
|  |  | S | S |
|
| B |
| S | S | S | T | T |
| B |
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . |
  |
  |   |
89 | 90 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
A | D | A | L | I | L | A |
Query Conservation |   |
  |
|   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
Template Sequence |   |
F | D | I | V | Y | V | Y |
Template Known Secondary structure |   |
| S |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
163 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|