Job Description P08200 Confidence 98.47% Date Thu Jan 5 11:00:54 GMT 2012 Rank 29 Aligned Residues 262 % Identity 16% Template d1ptma_ SCOP info Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like PdxA-like Resolution 1.96

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		25	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.															.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	N	P	I	I	P	Y	I	E	G	D	.	.	G	I	G	V	D	V	T	P	A	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	V	D	A	A	V	E	K	A	Y	K	G	E	R	K	I	S	W	M	E	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.
Template Sequence		K	T	Q	R	V	V	I	T	P	G	E	P	A	G	I	G	P	D	L	V	V	Q	L	A	Q	R	E	W	P	V	E	L	V	V	C	A	D	A	T	L	L	T	N	R	A	A	X	L	.	.	.	G	L	P	L	T	L	R	P	Y	S	P	N	S	P	A	Q	P	Q	T	A	G	T	L	T	L	L	P	V	A
Template Known Secondary structure												S	T	T	S	S									T	T	S			S	S																		T	.	.	.	T										T	T	S							T	T
Template Predicted Secondary structure																																																		.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
											70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																									.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																									.	.
Query Sequence		.	.	.	.	.	.	.	.	.	T	G	E	K	S	T	Q	V	Y	G	Q	D	V	W	L	P	A	E	T	L	D	L	I	R	.	.	E	Y	R	V	A	I	K	G	P	L	T	T	P	V	G	G	G	I	R	S	L	N	V	A	L	R	Q	E	L	D	L	Y	I	C	L	R	P	V	R	Y	Y	Q	G	T	P
Query Conservation		.	.	.	.	.	.	.	.	.																									.	.
Alig confidence		.	.	.	.	.	.	.	.	.												.	.			.									.	.												.	.	.	.	.	.	.	.	.
Template Conservation																						.	.			.																						.	.	.	.	.	.	.	.	.
Template Sequence		L	R	A	P	V	T	A	G	Q	L	A	V	E	N	G	H	Y	V	V	E	.	.	T	L	.	A	R	A	C	D	G	C	L	N	G	E	F	A	A	L	I	T	G	P	V	H	.	.	.	.	.	.	.	.	.	K	G	V	I	N	D	A	G	I	P	F	T	G	H	T	E	F	F	E	E	R	S	Q	A	K
Template Known Secondary structure			S	S			B	T	T	B			T	T								.	.			.										T	S		S									.	.	.	.	.	.	.	.	.							T	T														T	T		S
Template Predicted Secondary structure																						.	.			.																						.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.										.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	V	K	H	P	E	L	T	D	M	V	I	F	R	E	N	S	E	D	I	Y	A	G	I	E	W	K	A	D	S	A	D	A	E	K	V	I	K	F	L	R	E	E	M	G	V	K	K	I	R	F	P	E	H	C	G	I	G	I	K	P	C	S	E	E	G	T	K	R	L	V	R	A	A	I	E	Y	A	I
Query Conservation
Alig confidence					.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	V	.	.	.	.	.	.	.	X	X	L	A	T	E	E	L	R	V	A	L	A	T	T	H	L	P	L	R	D	I	A	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	P	A	L	L	H	E	V	I	A	I	L	H	H	D	L	R
Template Known Secondary structure					.	.	.	.	.	.	.					S	S	S						S	S		S	S		G	G	G					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		148	.	150								.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																												.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		219	220				.	.	.	.	.	.	.	.	.											230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure				.	.	.										.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.										.	.	.	.	.	.	.	.	.	.
Query Sequence		A	N	.	.	.	D	R	D	S	V	T	L	V	H	.	.	.	.	.	.	.	.	.	.	K	G	N	I	M	K	F	T	E	G	A	F	K	D	W	G	Y	Q	L	A	R	E	E	F	G	G	E	L	I	D	G	G	P	W	L	K	V	K	N	P	N	T	G	K	E	I	V	I	K	D	V	I	A	D	A	F
Query Conservation				.	.	.										.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.										.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	K	F	G	I	A	E	P	R	I	L	V	C	G	L	N	P	H	A	G	E	G	G	H	X	G	T	E	E	I	D	T	I	I	P	V	L	N	E	L	R	A	Q	G	X	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	P	L	P	A	D	T	L
Template Known Secondary structure			T	T			S	S								S	S	G	G	G	G	G	G	G	T	T		S					T											T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240																									.	.	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	Q	I	L	L	R	P	A	E	Y	D	V	I	A	C	M	N	L	N	G	D	Y	I	S	D	A	L	A	A	Q	V	G	G	I	G	I	A	P	G	A	N	I	G	D	E	C	A	L	F	E	A	T	H	G	T	A	P	K	Y	A	G	Q	D	K	V	N	P	G	S	I	I	L	S	A	E	M	M	L	R
Query Conservation
Alig confidence								.	.																														.	.	.	.
Template Conservation								.	.																														.	.	.	.
Template Sequence		F	Q	P	K	Y	L	.	.	D	N	A	D	A	V	L	A	X	Y	H	D	Q	G	L	P	V	L	K	Y	Q	G	F	G	R	G	V	N	I	.	.	.	.	T	L	G	L	P	F	I	R	T	S	V	D	H	G	T	A	L	E	L	A	G	R	G	K	A	D	V	G	S	F	I	T	A	L	N	L	A	I	K
Template Known Secondary structure		S	S					.	.	T	T		S					S	S										T	T		S	S	S					.	.	.	.			S	S	S	S						S	S				G	G	G	T	T	S	S
Template Predicted Secondary structure								.	.																														.	.	.	.
Template SS confidence
		250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.					.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions