Job Description P08200 Confidence 100.00% Date Thu Jan 5 11:00:54 GMT 2012 Rank 13 Aligned Residues 341 % Identity 28% Template c3r8wC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:3-isopropylmalate dehydrogenase 2, chloroplastic; PDBTitle: structure of 3-isopropylmalate dehydrogenase isoform 2 from2 arabidopsis thaliana at 2.2 angstrom resolution Resolution 2.25 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	P	I	I	P	Y	I	E	G	D	G	I	G	V	D	V	T	P	A	M	L	K	V	V	D	A	A	V	E	K	A	Y	K	G	E	R	K	I	S	W	M	E	I	Y	T	G	E	K	S	T	Q	V	Y	G	Q	D	V	W	L	P	A	E	T	L	D	L	I	R	E	Y	R	V	A	I	K	G	P	L	T
Query Conservation
Alig confidence																																		.	.	.																						.	.
Template Conservation																																		.	.	.																						.	.
Template Sequence		K	R	Y	T	I	T	L	L	P	G	D	G	I	G	P	E	V	V	S	I	A	K	N	V	L	Q	Q	A	G	S	L	E	.	.	.	G	V	E	F	N	F	R	E	M	P	I	G	G	A	A	L	D	L	V	G	V	.	.	P	L	P	E	E	T	I	S	A	A	K	E	S	D	A	V	L	L	G	A	I	G
Template Known Secondary structure												S	T	T																			T	.	.	.	T																			S	S	.	.	S	S											S	S
Template Predicted Secondary structure																																		.	.	.																						.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		105	.	.	.	.	110	.							.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.																											.	.	.	.
Query SS confidence									.	.	.	.	.	.																											.	.	.	.
Query Sequence		T	P	V	G	G	G	I	.	.	.	.	.	.	R	S	L	N	V	A	L	R	Q	E	L	D	L	Y	I	C	L	R	P	V	R	Y	Y	Q	G	T	.	.	.	.	P	S	P	V	K	H	P	E	L	T	D	M	V	I	F	R	E	N	S	E	D	I	Y	A	G	I	E	W	K	A	D	S	A	D	A	E	K
Query Conservation									.	.	.	.	.	.																											.	.	.	.
Alig confidence									.	.	.	.	.	.																											.	.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	K	W	D	N	N	E	K	H	L	R	P	E	K	G	L	L	Q	I	R	A	A	L	K	V	F	A	N	L	R	P	A	T	V	L	P	Q	L	V	D	A	S	T	L	K	R	E	V	A	E	G	V	D	L	M	V	V	R	E	L	T	G	G	I	Y	F	G	E	P	R	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	S		G	G	G	S													T												G	G	G	G	G	G	S	S	S						T	T										S		S	T	T	T		S	S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	K	F	L	R	E	E	M	G	V	K	K	I	R	F	P	E	H	C	G	I	G	I	K	P	C	S	E	E	G	T	K	R	L	V	R	A	A	I	E	Y	A	I	A	N	D	R	D	S	V	T	L	V	H	K	G	N	I	M	K	F	T	E	G	A	F	K	D	W	G	Y	Q	L	A	R	E	E	F	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																																						.																		.														.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																						.																		.														.	.
Template Sequence		.	.	.	.	.	.	.	.	.	G	I	K	T	N	E	N	G	E	E	V	G	F	N	T	E	V	Y	A	A	H	E	I	D	R	I	A	R	V	A	F	E	T	A	R	K	R	.	R	G	K	L	C	S	V	D	K	A	N	V	L	E	A	S	I	.	L	W	R	K	R	V	T	A	L	A	S	E	Y	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.						G	G	G																												T	T	.	T	S								T	T	T						.										G	G	G	S	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																						.																		.														.	.
Template SS confidence
											149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		G	E	L	I	D	G	G	P	W	L	K	V	K	N	P	N	T	G	K	E	I	V	I	K	D	V	I	A	D	A	F	L	Q	Q	I	L	L	R	P	A	E	Y	D	V	I	A	C	M	N	L	N	G	D	Y	I	S	D	A	L	A	A	Q	V	G	G	I	G	I	A	P	G	A	N	I	G	D	E	.	C	A
Query Conservation																																																																															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	V	E	L	S	H	M	Y	V	D	N	A	A	M	Q	L	V	R	D	P	K	Q	F	D	T	I	V	T	N	N	I	F	G	D	I	L	S	D	E	A	S	M	I	T	G	S	I	G	M	L	P	S	A	S	L	S	D	S	G	P	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S																		G	G	G		S																					S		G	G	G								S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.					.	.	.	.	.
Predicted Secondary structure																																			.																																						.	.	.	.
Query SS confidence																																			.																																						.	.	.	.
Query Sequence		L	F	E	A	T	H	G	T	A	P	K	Y	A	G	Q	D	K	V	N	P	G	S	I	I	L	S	A	E	M	M	L	R	H	.	M	G	W	T	E	A	A	D	L	I	V	K	G	M	E	G	A	I	N	A	K	T	V	T	Y	D	F	E	R	L	M	D	G	A	K	L	L	.	.	.	.	K	C	S	E	F
Query Conservation																																			.																																						.	.	.	.
Alig confidence																																			.																												.	.	.	.	.	.					.	.	.	.
Template Conservation																																																															.	.	.	.	.	.
Template Sequence		L	F	E	P	I	H	G	S	A	P	D	I	A	G	Q	D	K	A	N	P	L	A	T	I	L	S	A	A	M	L	L	K	Y	G	L	G	E	E	K	A	A	K	R	I	E	D	A	V	L	V	A	L	N	N	G	F	R	T	G	D	I	.	.	.	.	.	.	Y	S	A	G	T	K	L	V	G	C	K	E	M
Template Known Secondary structure						S	S				T	T	S	T	T	T	T				T														T	T			T	T															T	T				G	G	G	.	.	.	.	.	.			T	T	S
Template Predicted Secondary structure																																																															.	.	.	.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.							.	340	.	.	.	.	.	.	.	.	.	350	.
		409	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	A	I	I	E	N	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	E	V	L	K	S	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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