Job Description P08200 Confidence 100.00% Date Thu Jan 5 11:00:54 GMT 2012 Rank 8 Aligned Residues 340 % Identity 29% Template c3fmxX_ PDB info PDB header:oxidoreductase Chain: X: PDB Molecule:tartrate dehydrogenase/decarboxylase; PDBTitle: crystal structure of tartrate dehydrogenase from pseudomonas2 putida complexed with nadh Resolution 2.95 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		P	I	I	P	Y	I	E	G	D	G	I	G	V	D	V	T	P	A	M	L	K	V	V	D	A	A	V	E	K	A	Y	K	G	E	R	K	I	S	W	M	E	I	Y	T	.	G	E	K	S	T	Q	V	Y	G	Q	D	V	W	L	P	A	E	T	L	D	L	I	R	E	Y	R	V	A	I	K	G	P	L	T	T
Query Conservation																																														.
Alig confidence																																.	.	.												.											.	.
Template Conservation																																.	.	.																							.	.
Template Sequence		F	R	I	A	A	I	P	G	D	G	I	G	L	E	V	L	P	E	G	I	R	V	L	E	A	A	A	L	K	H	.	.	.	G	L	A	L	E	F	D	T	F	E	W	A	S	C	D	Y	Y	L	Q	H	G	K	.	.	M	M	P	D	D	W	A	E	Q	L	K	Q	Y	D	A	I	Y	F	G	A	V	G	W
Template Known Secondary structure										S	T						S															.	.	.	T							B		S		S	S								S	S	.	.	S	S		T	T						T	T	S	S									B
Template Predicted Secondary structure																																.	.	.																							.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		106	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.																																						.	.
Query SS confidence				.	.	.	.																																						.	.
Query Sequence		P	V	.	.	.	.	G	G	G	I	R	S	L	N	V	A	L	R	Q	E	L	D	L	Y	I	C	L	R	P	V	R	Y	Y	Q	G	T	P	S	P	V	K	H	P	.	.	E	L	T	D	M	V	I	F	R	E	N	S	E	D	I	Y	A	G	I	E	W	K	A	D	S	A	D	A	E	K	V	I	K	F	L
Query Conservation				.	.	.	.																																						.	.
Alig confidence				.	.	.	.																																						.	.																												.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		P	D	K	V	P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	I	R	P	V	R	L	F	P	G	V	P	C	A	L	A	N	R	K	V	G	D	I	D	F	V	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	I	M	F	E	N	T	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	B								T	T								T	T												T	T				S	S	S	S			T	T											S	S	B	T									S	T	T	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	E	M	G	V	K	K	I	R	F	P	E	H	C	G	I	G	I	K	P	C	S	E	E	G	T	K	R	L	V	R	A	A	I	E	Y	A	I	A	N	D	R	D	S	V	T	L	V	H	K	G	N	I	M	K	F	T	E	G	A	F	K	D	W	G	Y	Q	L	A	R	E	E	F	G	G	E	L	I	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																																															.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																																															.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	E	N	E	I	V	I	Q	E	S	I	F	T	R	R	G	V	D	R	I	L	K	Y	A	F	D	L	A	E	K	R	E	R	K	H	V	T	S	A	T	K	S	N	G	M	A	I	S	M	P	Y	W	D	K	R	T	E	A	M	A	A	H	Y	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T	T								B												T	T	S	S	T	T	T	T	S	S	S									T	T	T	S	S	S														T	T		.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																															.	.	.	.	.	.	.
Template SS confidence
													153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.				.	.	.	.
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		G	G	P	W	L	K	V	K	N	P	N	T	G	K	E	I	V	I	K	D	V	I	A	D	A	F	L	Q	Q	I	L	L	R	P	A	E	Y	D	V	I	A	C	M	N	L	N	G	D	Y	I	S	D	A	L	A	A	Q	V	G	G	I	G	I	A	P	G	A	N	I	G	D	E	C	.	.	.	A	L	F	E
Query Conservation																																																																											.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	P	H	V	S	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	L	Q	P	E	R	F	D	V	V	V	A	S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	A	G	T	I	G	I	A	P	S	A	N	L	N	P	E	R	N	F	P	S	L	F	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S																		T	T	S		S						T					T	T	T	T	T	T	T	T	T	T	T		G	G	G								T	T		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.						.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		A	T	H	G	T	A	P	K	Y	A	G	Q	D	K	V	N	P	G	S	I	I	L	S	A	E	M	M	L	R	H	M	G	.	.	.	.	.	W	T	E	A	A	D	L	I	V	K	G	M	E	G	A	I	N	A	K	T	V	T	Y	D	F	E	R	L	M	D	G	A	K	L	L	K	C	S	E	F	G	D	A
Query Conservation																																		.	.	.	.	.
Alig confidence																																		.	.	.	.	.																										.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.
Template Sequence		P	V	H	G	S	A	P	D	I	F	G	K	N	I	A	N	P	I	A	M	I	W	S	G	A	L	M	L	E	F	L	G	Q	G	D	E	R	Y	Q	R	A	H	D	D	M	L	N	A	I	E	R	V	I	A	D	G	S	V	T	P	D	M	.	.	.	.	.	.	G	G	T	L	S	T	Q	Q	V	G	A	A
Template Known Secondary structure			S	S				G	G	G	T	T	S																						S																						T				T	T	T	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																.	.	.	.	.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.							.	.	.	.	.	350	.	.	.	.	.	.
		412	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	E	N	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	D	T	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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