 |
Job Description | P08200 | Confidence | 21.85% | Date | Thu Jan 5 11:00:54 GMT 2012 |
Rank | 63 | Aligned Residues | 68 |
% Identity | 12% | Template | c3c6kC_ |
PDB info |
PDB header:transferase | Chain: C: PDB Molecule:spermine synthase; |
PDBTitle: crystal structure of human spermine synthase in complex2 with spermidine and 5-methylthioadenosine
|
Resolution | 1.95 Å |
|
 |
  |   |
213 | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | I | E | Y | A | I | A | N | D | R | D | S | V | T | L | V | H | K | G | N | I | M | K | F | T | E | G | A | F | K | D | W | G | Y | Q | L | A | R | E | E | F | G | G | E | L | I | D | G | G | P | W | L | K | V | K | N | P | N | T | G | K | E | I | V | I | K | D | V | I | A | D | A | F | L | Q | Q | I | L | L | R |
Query Conservation |   |
|
|   |   |
|   |   |
|   |
|
|   |
|
|   |
|   |
|
|
|
|
|
|   |
|
|
|
|
|   |   |   |   |   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |
|
|
|   |   |   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|
|   |   |   |   |   |
|   |   |
|
|
|
|   |   |
| . | . | . | . | . | . | . | . | . | . | . |
|   |   |
|
|
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |
Template Sequence |   |
I | L | C | E | I | V | K | L | K | P | K | M | V | T | M | V | E | I | D | Q | M | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | D | G | C | K | K | Y | M | R | K | L | D | N | L | K | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | C | Y | Q | V | L | I | E | D | C | I | P | V | L | K | R | Y | A | K | E |
Template Known Secondary structure |   |
 |  |  |  |  |  | T | T |
|
| S |  |  |  |  |  |  | S |
|  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|
| S | S | B |
| . | . | . | . | . | . | . | . | . | . | . | S | S |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
206 | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . |
  |
  |   |
293 | . | . | . | . | . | . | 300 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | A | E | Y | D | V | I | A | C | M |
Query Conservation |   |
|   |   |
|
|
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|
|
|
|   |
|
Template Sequence |   |
G | R | E | F | D | Y | V | I | N | D |
Template Known Secondary structure |   |
T |
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
  |   |
269 | 270 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|