Job Description P08200 Confidence 100.00% Date Thu Jan 5 11:00:54 GMT 2012 Rank 23 Aligned Residues 321 % Identity 31% Template c3blxM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:isocitrate dehydrogenase [nad] subunit 1; PDBTitle: yeast isocitrate dehydrogenase (apo form) Resolution 2.70 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	I	I	P	Y	I	E	G	D	G	I	G	V	D	V	T	P	A	M	L	K	V	V	D	A	A	V	E	K	A	Y	K	G	E	R	K	I	S	W	M	E	I	Y	T	G	E	K	S	T	Q	V	Y	G	Q	D	V	W	L	P	A	E	T	L	D	L	I	R	E	Y	R	V	A	I	K	G	P	L	T	T
Query Conservation
Alig confidence																													.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	T	V	T	L	I	P	G	D	G	V	G	K	E	I	T	D	S	V	R	T	I	F	E	A	E	.	.	.	.	.	.	.	N	I	P	I	D	W	E	T	I	N	I	K	E	G	V	Y	.	.	.	.	.	.	.	.	.	.	.	E	A	V	E	S	L	K	R	N	K	I	G	L	K	G	L	W	H	T
Template Known Secondary structure											S																		.	.	.	.	.	.	.	T		S														.	.	.	.	.	.	.	.	.	.	.																			S
Template Predicted Secondary structure																													.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.								.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.												60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		106	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		P	V	G	.	G	G	I	R	S	L	N	V	A	L	R	Q	E	L	D	L	Y	I	C	L	R	P	V	R	Y	Y	Q	G	T	P	S	P	V	K	H	P	E	L	T	D	M	V	I	F	R	E	N	S	E	D	I	Y	A	G	I	E	W	K	A	D	S	A	D	A	E	K	V	I	K	F	L	R	E	E	M	G
Query Conservation					.
Alig confidence					.																																		.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	D	Q	T	G	H	G	S	L	N	V	A	L	R	K	Q	L	D	I	Y	A	N	V	A	L	F	K	S	L	K	G	V	K	T	R	I	.	.	.	P	D	I	D	L	I	V	I	R	E	N	T	E	G	E	F	S	G	L	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T											T	S													T	T				S	S	.	.	.		S										S	S	G	G	G	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		V	K	K	I	R	F	P	E	H	C	G	I	G	I	K	P	C	S	E	E	G	T	K	R	L	V	R	A	A	I	E	Y	A	I	A	N	D	R	D	S	V	T	L	V	H	K	G	N	I	M	K	F	T	E	G	A	F	K	D	W	G	Y	Q	L	A	.	R	E	E	F	G	G	E	L	I	D	G	G	P	W
Query Conservation																																																																			.
Alig confidence		.	.	.	.																																																														.				.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																																																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	E	S	V	P	G	V	V	E	S	L	K	V	M	T	R	P	K	T	E	R	I	A	R	F	A	F	D	F	A	K	K	Y	N	R	K	S	V	T	A	V	H	K	A	N	I	M	K	L	G	D	G	L	F	R	N	I	I	T	E	I	G	Q	K	E	Y	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.				T	T																											T	T										T	T	T	S	T	T																		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.																																																																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		L	K	V	K	N	P	N	T	G	K	E	I	V	I	K	D	V	I	A	D	A	F	L	Q	Q	I	L	L	R	P	A	E	Y	D	V	I	A	C	M	N	L	N	G	D	Y	I	S	D	A	L	A	A	Q	V	G	G	I	G	I	A	P	G	A	N	I	G	D	E	C	A	L	F	E	A	.	T	H	G	T	A
Query Conservation																																																																												.
Alig confidence		.	.	.	.	.	.	.	.	.																																																																		.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	P	D	I	D	V	S	S	I	I	V	D	N	A	S	M	Q	A	V	A	K	P	H	Q	F	D	V	L	V	T	P	S	M	Y	G	T	I	L	G	N	I	G	A	A	L	I	G	G	P	G	L	V	A	G	A	N	F	G	R	D	Y	A	V	F	E	P	G	S	R	H	V	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T	T	S																		G	G	G		S																					T		G	G	G								S	S							T	T	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		P	K	Y	A	G	Q	D	K	V	N	P	G	S	I	I	L	S	A	E	M	M	L	R	H	M	G	W	T	E	A	A	D	L	I	V	K	G	M	E	G	A	I	N	A	K	.	T	V	T	Y	D	F	E	R	L	M	D	G	A	K	L	L	K	C	S	E	F	G	D	A	I	I	E	N	M
Query Conservation																																															.
Alig confidence																																															.							.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.
Template Sequence		L	D	I	K	G	Q	N	V	A	N	P	T	A	M	I	L	S	S	T	L	M	L	N	H	L	G	L	N	E	Y	A	T	R	I	S	K	A	V	H	E	T	I	A	E	G	K	H	T	T	R	D	I	.	.	.	.	.	.	G	G	S	S	S	T	T	D	F	T	N	E	I	I	N	K	L
Template Known Secondary structure							T	T																			T																		S	S	S	S		B	G	G	G	.	.	.	.	.	.	T			B
Template Predicted Secondary structure																																																						.	.	.	.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.							330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions