Job Description P08200 Confidence 100.00% Date Thu Jan 5 11:00:54 GMT 2012 Rank 21 Aligned Residues 337 % Identity 35% Template c3blxL_ PDB info PDB header:oxidoreductase Chain: L: PDB Molecule:isocitrate dehydrogenase [nad] subunit 2; PDBTitle: yeast isocitrate dehydrogenase (apo form) Resolution 2.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	V	V	V	P	A	Q	G	K	K	I	T	L	Q	N	G	K	L	N	V	P	E	N	P	I	I	P	Y	I	E	G	D	G	I	G	V	D	V	T	P	A	M	L	K	V	V	D	A	A	V	E	K	A	Y	K	G	E	R	K	I	S	W	M	E	I	Y	T	G	E	K	S	T	Q	V	Y	G	Q	D	V
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.													.									.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.													.									.	.
Template Sequence		G	R	Y	T	G	K	P	N	P	S	T	G	K	Y	T	.	.	.	.	.	.	.	.	.	.	.	V	S	F	I	E	G	D	G	I	G	P	E	I	S	K	S	V	K	K	I	F	S	A	A	.	.	.	.	.	.	.	N	V	P	I	E	W	E	S	C	D	V	S	.	P	I	F	V	N	G	L	T	.	.
Template Known Secondary structure		T								T	T	T	S				.	.	.	.	.	.	.	.	.	.	.		B					S	T	T														T	T	.	.	.	.	.	.	.	T		S										.					T	T			.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.													.									.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.												.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.								.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	P	A	E	T	L	D	L	I	R	E	Y	R	V	A	I	K	G	P	L	T	T	P	V	G	G	G	I	R	S	L	N	V	A	L	R	Q	E	L	D	L	Y	I	C	L	R	P	V	R	Y	Y	Q	G	T	P	S	P	V	K	H	P	E	L	T	D	M	V	I	F	R	E	N	S	E	D	I	Y	A	G
Query Conservation
Alig confidence																										.	.	.	.																																.	.	.
Template Conservation																										.	.	.	.																																.	.	.
Template Sequence		T	I	P	D	P	A	V	Q	S	I	T	K	N	L	V	A	L	K	G	P	L	A	T	P	.	.	.	.	H	R	S	L	N	L	T	L	R	K	T	F	G	L	F	A	N	V	R	P	A	K	S	I	E	G	F	K	T	T	Y	.	.	.	E	N	V	D	L	V	L	I	R	E	N	T	E	G	E	Y	S	G
Template Known Secondary structure															S											.	.	.	.												T	T												T	T				S	S	.	.	.		S										S	S
Template Predicted Secondary structure																										.	.	.	.																																.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.					.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	W	K	A	D	S	A	D	A	E	K	V	I	K	F	L	R	E	E	M	G	V	K	K	I	R	F	P	E	H	C	G	I	G	I	K	P	C	S	E	E	G	T	K	R	L	V	R	A	A	I	E	Y	A	I	A	N	D	R	D	S	V	T	L	V	H	K	G	N	I	M	K	F	T	E	G	A	F	K
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	C	P	G	V	V	Q	S	I	K	L	I	T	R	D	A	S	E	R	V	I	R	Y	A	F	E	Y	A	R	A	I	G	R	P	R	V	I	V	V	H	K	S	T	I	Q	R	L	A	D	G	L	F	V
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	T	T																											T	T		S							S		T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.																								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																									.	.																				.
Query SS confidence																																																									.	.																				.
Query Sequence		D	W	G	Y	Q	L	A	R	E	E	F	G	G	E	L	I	D	G	G	P	W	L	K	V	K	N	P	N	T	G	K	E	I	V	I	K	D	V	I	A	D	A	F	L	Q	Q	I	L	L	R	P	A	E	Y	D	.	.	V	I	A	C	M	N	L	N	G	D	Y	I	S	D	A	L	A	A	Q	.	V	G	G
Query Conservation																																																									.	.																				.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.																				.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	A	K	E	L	S	K	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	L	T	L	E	T	E	L	I	D	N	S	V	L	K	V	V	T	N	P	S	A	Y	T	D	A	V	S	V	C	P	N	L	Y	G	D	I	L	S	D	L	N	S	G	L	S	A	G	S
Template Known Secondary structure									T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S																		G	G	G	G	T	T																						T	S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.																					.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.			.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		I	G	I	A	P	G	A	N	I	G	D	E	C	A	L	F	E	A	T	H	G	T	A	P	K	Y	A	G	Q	D	K	V	N	P	G	S	I	I	L	S	A	E	M	M	L	R	H	M	G	W	T	E	A	A	D	L	I	V	K	G	M	E	G	A	I	N	A	K	.	.	T	V	T	Y	D	F	E	R	L	M
Query Conservation																																																																						.	.
Alig confidence																																																																						.	.							.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		L	G	L	T	P	S	A	N	I	G	H	K	I	S	I	F	E	A	V	H	G	S	A	P	D	I	A	G	Q	D	K	A	N	P	T	A	L	L	L	S	S	V	M	M	L	N	H	M	G	L	T	N	H	A	D	Q	I	Q	N	A	V	L	S	T	I	A	S	G	P	E	N	R	T	G	D	L	.	.	.	.
Template Known Secondary structure		S	T	T								S	S								S				G	G	G	T	T	T	T				T															T											T						T	S	S	T	T	S	S		G	G	G	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	A	K	L	L	K	C	S	E	F	G	D	A	I	I	E	N	M
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	A	G	T	A	T	T	S	S	F	T	E	A	V	I	K	R	L
Template Known Secondary structure		.	.	T
Template Predicted Secondary structure		.	.
Template SS confidence
				338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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