Job Description P08200 Confidence 100.00% Date Thu Jan 5 11:00:54 GMT 2012 Rank 6 Aligned Residues 344 % Identity 40% Template c2d1cB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase; PDBTitle: crystal structure of tt0538 protein from thermus thermophilus hb8 Resolution 1.80 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	K	K	I	T	L	Q	N	G	K	L	N	V	P	E	N	P	I	I	P	Y	I	E	G	D	G	I	G	V	D	V	T	P	A	M	L	K	V	V	D	A	A	V	E	K	A	Y	K	G	E	R	K	I	S	W	M	E	I	Y	T	G	E	K	S	T	Q	V	Y	G	Q	D	V	W	L	P	A	E	T	L
Query Conservation
Alig confidence															.	.	.	.	.																										.	.	.	.	.	.	.																						.
Template Conservation															.	.	.	.	.																										.	.	.	.	.	.	.																						.
Template Sequence		T	G	K	K	M	H	V	L	E	D	G	R	K	.	.	.	.	.	L	I	T	V	I	P	G	D	G	I	G	P	E	C	V	E	A	T	L	K	V	L	E	A	A	.	.	.	.	.	.	.	K	A	P	L	A	Y	E	V	R	E	A	G	A	S	V	F	R	R	G	I	A	.	S	G	V	P	Q	E	T	I
Template Known Secondary structure		T	S							T	T	S			.	.	.	.	.								S	T	T															T	.	.	.	.	.	.	.	T											S					T	T	T		T	.	T	S
Template Predicted Secondary structure															.	.	.	.	.																										.	.	.	.	.	.	.																						.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20						.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.								.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	I	R	E	Y	R	V	A	I	K	G	P	L	T	T	P	V	G	G	G	I	R	S	L	N	V	A	L	R	Q	E	L	D	L	Y	I	C	L	R	P	V	R	Y	Y	Q	G	T	P	S	P	V	K	H	P	E	L	T	D	M	V	I	F	R	E	N	S	E	D	I	Y	A	G	I	E	W	K	A	D	S
Query Conservation
Alig confidence																																																									.																					.	.	.	.
Template Conservation																																																									.																					.	.	.	.
Template Sequence		E	S	I	R	K	T	R	V	V	L	K	G	P	L	E	T	P	V	G	Y	G	E	K	S	A	N	V	T	L	R	K	L	F	E	T	Y	A	N	V	R	P	V	R	E	F	P	N	V	P	T	P	Y	A	G	R	.	G	I	D	L	V	V	V	R	E	N	V	E	D	L	Y	A	G	I	E	H	.	.	.	.
Template Known Secondary structure																			S	S	S	S	S											T	T												T	T				T	T	T	T	S	.											S		B	G	G	G					.	.	.	.
Template Predicted Secondary structure																																																									.																					.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	E	K	V	I	K	F	L	R	E	E	M	G	V	K	K	I	R	F	P	E	H	C	G	I	G	I	K	P	C	S	E	E	G	T	K	R	L	V	R	A	A	I	E	Y	A	I	A	N	D	R	D	S	V	T	L	V	H	K	G	N	I	M	K	F	T	E	G	A	F	K	D	W	G	Y	Q	L	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Q	T	P	S	V	A	Q	T	L	K	L	I	S	W	K	G	S	E	K	I	V	R	F	A	F	E	L	A	R	A	E	G	R	K	K	V	H	C	A	T	K	S	N	I	M	K	L	A	E	G	T	L	K	R	A	F	E	Q	V	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T							B																				T	T										T	T	T		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	E	F	G	G	E	L	I	D	G	G	P	W	L	K	V	K	N	P	N	T	G	K	E	I	V	I	K	D	V	I	A	D	A	F	L	Q	Q	I	L	L	R	P	A	E	Y	D	V	I	A	C	M	N	L	N	G	D	Y	I	S	D	A	L	A	A	Q	V	G	G	I	G	I	A	P	G	A	N	I	G
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	I	E	A	V	H	I	I	V	D	N	A	A	H	Q	L	V	K	R	P	E	Q	F	E	V	I	V	T	T	N	M	N	G	D	I	L	S	D	L	T	S	G	L	I	G	G	L	G	F	A	P	S	A	N	I	G
Template Known Secondary structure		T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S																		G	G	G		S																		T	T	T	T		G	G	G
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		211	.	.																					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400	.				.	.	.	.
Predicted Secondary structure																																																												.															.	.	.
Query SS confidence																																																												.															.	.	.
Query Sequence		D	E	C	A	L	F	E	A	T	H	G	T	A	P	K	Y	A	G	Q	D	K	V	N	P	G	S	I	I	L	S	A	E	M	M	L	R	H	M	G	W	T	E	A	A	D	L	I	V	K	G	M	E	G	A	I	N	A	K	.	T	V	T	Y	D	F	E	R	L	M	D	G	A	K	.	.	.	L	L	K	C
Query Conservation																																																												.															.	.	.
Alig confidence																																																												.							.	.	.	.	.	.			.	.	.
Template Conservation																																																																			.	.	.	.	.	.
Template Sequence		N	E	V	A	I	F	E	A	V	H	G	S	A	P	K	Y	A	G	K	N	V	I	N	P	T	A	V	L	L	S	A	V	M	M	L	R	Y	L	E	E	F	A	T	A	D	L	I	E	N	A	L	L	Y	T	L	E	E	G	R	V	L	T	G	D	V	.	.	.	.	.	.	V	G	Y	D	R	G	A	K	T
Template Known Secondary structure		S	S							S	S				G	G	G	T	T	S	S																		T	T																			T	S	S		B				.	.	.	.	.	.			T	T	T		B
Template Predicted Secondary structure																																																																			.	.	.	.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.							.	.	.	.	340	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	F	G	D	A	I	I	E	N	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	Y	T	E	A	I	I	Q	N	L
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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