Job Description P08200 Confidence 100.00% Date Thu Jan 5 11:00:54 GMT 2012 Rank 22 Aligned Residues 357 % Identity 25% Template c1zorB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase; PDBTitle: isocitrate dehydrogenase from the hyperthermophile thermotoga maritima Resolution 2.24 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	E	N	P	I	I	P	Y	I	E	G	D	G	I	G	V	D	V	T	P	A	M	L	K	V	V	D	A	A	V	E	K	A	Y	K	G	E	R	K	I	S	W	M	E	I	Y	T	G	E	K	S	T	Q	V	Y	G	Q	D	V	W	L	P	A	E	T	L	D	L	I	R	E	Y	R	V	A	I	K	G	P
Query Conservation
Alig confidence																																.	.	.	.	.	.	.																						.	.
Template Conservation																																.	.	.	.	.	.	.																						.	.
Template Sequence		V	K	V	K	N	P	I	V	E	L	D	G	D	E	M	A	R	V	M	W	K	M	I	K	E	K	L	I	L	P	.	.	.	.	.	.	.	Y	L	D	I	Q	L	V	Y	F	D	L	G	I	K	K	R	D	E	T	D	D	.	.	Q	I	T	I	E	A	A	K	A	I	K	K	Y	G	V	G	V	K	C	A
Template Known Secondary structure					S	S																							T	G	G	.	.	.	.	.	.	.	G																		T	T	T	.	.														S
Template Predicted Secondary structure																																.	.	.	.	.	.	.																						.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.								.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		103	.	.	.	.	.	.										110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.
Query Sequence		L	T	T	P	V	G	G	.	.	.	.	.	.	.	.	.	G	I	R	S	L	N	V	A	L	R	Q	E	L	D	L	Y	I	C	L	R	P	V	R	Y	Y	Q	G	T	P	S	P	V	K	H	P	E	L	T	D	M	V	I	F	R	E	N	S	E	D	I	Y	A	G	I	E	W	K	A	D	S	A	D	A	E
Query Conservation									.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.																								.												.
Template Conservation																																									.												.
Template Sequence		T	I	T	P	D	A	E	R	V	K	E	Y	N	L	K	K	A	W	K	S	P	N	A	T	I	R	A	Y	L	D	G	T	V	F	R	K	P	I	M	.	V	K	N	V	P	P	L	V	K	R	W	.	K	K	P	I	I	I	G	R	H	A	Y	G	D	I	Y	N	A	V	E	A	K	V	E	G	P	A	E	V
Template Known Secondary structure														T		S	S														T										.		T	T	S			S	S	T	T		.		S									S	S	G	G	G	G								S	S
Template Predicted Secondary structure																																									.												.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		K	V	I	K	F	L	R	E	E	M	G	V	K	K	I	R	F	P	E	H	C	G	I	G	I	K	P	C	S	E	E	G	T	K	R	L	V	R	A	A	I	E	Y	A	I	A	N	D	R	D	S	V	T	L	V	H	K	G	N	I	M	K	F	T	E	G	A	F	K	D	W	G	Y	Q	L	A	R	E	E	.
Query Conservation																																																																																	.
Alig confidence																																																			.																														.
Template Conservation																																																			.
Template Sequence		E	L	V	V	R	N	K	E	N	K	T	L	L	V	H	K	F	E	G	N	G	V	V	M	A	M	H	N	L	E	K	S	I	R	S	F	A	Q	S	C	I	N	Y	A	I	S	E	K	V	.	D	I	W	F	A	T	K	D	T	I	S	K	V	Y	H	A	Y	F	K	D	I	F	Q	E	E	V	D	K	R	K
Template Known Secondary structure							S	S	S										S	S																													T		.								T	T	T		T	T																T
Template Predicted Secondary structure																																																			.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
					253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	F	G	G	E	L	I	D	G	G	P	W	L	K	V	K	N	P	N	T	G	K	E	I	V	I	K	D	V	I	A	D	A	F	L	Q	Q	I	L	L	R	P	A	E	Y	D	V	I	A	C	M	N	L	N	G	D	Y	I	S	D	A	L	A	A	Q	V	G	G	I	G	I	A	P	G	A	N	I	G
Query Conservation		.	.	.
Alig confidence		.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Sequence		E	E	L	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	V	N	Y	R	Y	M	L	I	D	D	A	A	A	Q	I	L	R	S	E	G	G	M	.	L	W	A	C	M	N	Y	E	G	D	I	M	S	D	M	I	A	S	G	F	G	S	L	G	L	M	T	S	V	L	V	S
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T																		S				S	.																					S		G	G	G
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template SS confidence
		232	.	.	.	.																			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.							.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.								.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure		.																	.	.	.	.	.	.																								.	.	.	.	.	.	.
Query SS confidence		.																	.	.	.	.	.	.																								.	.	.	.	.	.	.
Query Sequence		.	D	E	C	A	L	F	E	A	T	H	G	T	A	P	K	Y	.	.	.	.	.	.	A	G	Q	D	K	V	N	P	G	S	I	I	L	S	A	E	M	M	L	R	H	M	G	.	.	.	.	.	.	.	W	T	E	A	A	D	L	I	V	K	G	M	E	G	A	I	N	A	K	T	V	T	Y	D	F	E	R
Query Conservation		.																	.	.	.	.	.	.																								.	.	.	.	.	.	.
Alig confidence		.																	.	.	.	.	.	.																								.	.	.	.	.	.	.																										.	.
Template Conservation																																																																																.	.
Template Sequence		P	D	G	V	Y	E	F	E	A	A	H	G	T	V	R	R	H	Y	Y	R	Y	L	K	G	E	K	T	S	T	N	P	T	A	S	I	F	A	W	T	G	A	I	R	K	R	G	E	L	D	G	T	P	E	V	C	E	F	A	D	K	L	E	K	A	V	I	N	T	I	E	S	G	V	I	T	K	D	L	.	.
Template Known Secondary structure		T	T								S	S													T																										T		T	T																		T	T				G	G	G	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		396	.	.	.	400	.	.	.									.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.
Query Sequence		L	M	D	G	A	K	L	L	.	.	.	.	.	.	.	.	K	C	S	E	F	G	D	A	I	I	E	N	M
Query Conservation										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.					.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	Q	P	F	T	E	P	P	I	D	K	Y	V	T	L	E	E	F	I	D	E	V	K	K	N	L
Template Known Secondary structure		.	.	.	.	T	T	T		S	S			S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.