Job Description P08200 Confidence 100.00% Date Thu Jan 5 11:00:54 GMT 2012 Rank 5 Aligned Residues 389 % Identity 52% Template c1tyoA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: isocitrate dehydrogenase from the hyperthermophile aeropyrum pernix in2 complex with etheno-nadp Resolution 2.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	K	V	V	V	P	A	Q	G	K	K	I	T	L	Q	N	G	K	L	N	V	P	E	N	P	I	I	P	Y	I	E	G	D	G	I	G	V	D	V	T	P	A	M	L	K	V	V	D	A	A	V	E	K	A	Y	K	G	E	R	K	I	S	W	M	E	I	Y	T	G	E	K	S	T	Q	V	Y	G	Q	D
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		T	E	E	L	S	P	P	P	G	G	S	L	V	E	Y	S	G	G	S	L	R	V	P	D	N	P	V	V	A	F	I	R	G	D	G	V	G	P	E	V	V	E	S	A	L	K	V	V	D	A	A	V	K	K	V	Y	G	G	S	R	R	I	V	W	W	E	L	L	A	G	H	L	A	R	E	K	C	G	E	.
Template Known Secondary structure		T	T	T					T	T		B						T	T						S	S	B								S	T	T																					T	T	S											S								S	S	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	L	P	A	E	T	L	D	L	I	R	E	Y	R	V	A	I	K	G	P	L	T	T	P	V	G	G	G	I	R	S	L	N	V	A	L	R	Q	E	L	D	L	Y	I	C	L	R	P	V	R	Y	Y	Q	G	T	P	S	P	V	K	H	P	E	L	T	D	M	V	I	F	R	E	N	S	E	D	I	Y	A
Query Conservation
Alig confidence		.																																																							.
Template Conservation		.																																																							.
Template Sequence		.	L	L	P	K	A	T	L	E	G	I	R	L	A	R	V	A	L	K	G	P	L	E	T	P	V	G	T	G	Y	R	S	L	N	V	A	I	R	Q	A	L	D	L	Y	A	N	I	R	P	V	R	Y	Y	G	Q	.	P	A	P	H	K	Y	A	D	R	V	D	M	V	I	F	R	E	N	T	E	D	V	Y	A
Template Known Secondary structure		.	S	S												S											T	T	S		T	T											T												S		.			S		T	T	G	G	G										S	S	S	G	G	G
Template Predicted Secondary structure		.																																																							.
Template SS confidence
			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	E	W	K	A	D	S	A	D	A	E	K	V	I	K	F	L	R	E	E	M	G	V	K	K	I	R	F	P	E	H	C	G	I	G	I	K	P	C	S	E	E	G	T	K	R	L	V	R	A	A	I	E	Y	A	I	A	N	D	R	D	S	V	T	L	V	H	K	G	N	I	M	K	F	T	E	G	A	F
Query Conservation
Alig confidence																									.	.	.
Template Conservation																									.	.	.
Template Sequence		G	I	E	W	P	H	D	S	P	E	A	A	R	I	R	R	F	L	A	E	E	F	G	.	.	.	I	S	I	R	E	D	A	G	I	G	V	K	P	I	S	R	F	A	T	R	R	L	M	E	R	A	L	E	W	A	L	R	N	G	N	T	V	V	T	I	M	H	K	G	N	I	M	K	Y	T	E	G	A	F
Template Known Secondary structure							T	T	S																.	.	.					T	T																												T										T	T	T	S	T	T	T
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.																						.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	D	W	G	Y	Q	L	A	R	E	E	F	G	G	E	L	I	D	G	G	P	W	L	K	V	K	N	P	N	T	G	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	I	K	D	V	I	A	D	A	F	L	Q	Q	I	L	L	R	P	A	E	Y	D	V	I	A
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	W	A	Y	E	V	A	L	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	E	H	V	V	T	E	Q	E	V	Q	E	K	Y	G	G	V	R	P	E	G	K	I	L	V	N	D	R	I	A	D	N	M	L	Q	Q	I	I	T	R	P	W	D	Y	Q	V	I	V
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	G	G											S	T	T				T	T																				G	G	G		S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.																					.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		C	M	N	L	N	G	D	Y	I	S	D	A	L	A	A	Q	V	G	G	I	G	I	A	P	G	A	N	I	G	D	E	C	A	L	F	E	A	T	H	G	T	A	P	K	Y	A	G	Q	D	K	V	N	P	G	S	I	I	L	S	A	E	M	M	L	.	R	H	M	G	W	T	E	A	A	D	L	I	V	K	G
Query Conservation																																																																		.
Alig confidence																																																																		.
Template Conservation
Template Sequence		A	P	N	L	N	G	D	Y	I	S	D	A	A	S	A	L	V	G	G	I	G	M	A	A	G	M	N	M	G	D	G	I	A	V	A	E	P	V	H	G	T	A	P	K	Y	A	G	K	D	L	I	N	P	S	A	E	I	L	S	A	S	L	L	I	G	E	F	M	G	W	R	E	V	K	S	I	V	E	Y	A
Template Known Secondary structure																		T	T		G	G	G								S	S							S	S				G	G	G	T	T	S	S		S															T	T	S
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	G	A	I	N	A	K	T	V	T	Y	D	F	E	R	L	M	D	G	A	K	L	L	K	C	S	E	F	G	D	A	I	I	E	N	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	K	A	V	Q	S	K	K	V	T	Q	D	L	A	R	H	M	P	G	V	Q	P	L	R	T	S	E	Y	T	E	T	L	I	A	Y	I
Template Known Secondary structure								T	T			B					T	T	S	T	T				B
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.