Job Description P42604 Confidence 19.33% Date Thu Jan 5 12:01:48 GMT 2012 Rank 64 Aligned Residues 71 % Identity 14% Template c3mu3A_ PDB info PDB header:immune system Chain: A: PDB Molecule:protein md-1; PDBTitle: crystal structure of chicken md-1 complexed with lipid iva Resolution 2.40 Å

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		7	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.							.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.																																													.	.	.	.	.	.
Query SS confidence														.	.																																													.	.	.	.	.	.
Query Sequence		H	A	L	D	N	V	A	V	A	L	A	D	.	.	L	A	E	G	T	E	V	S	V	D	N	Q	T	V	T	L	R	Q	D	V	A	R	G	H	K	F	A	L	T	D	I	A	K	G	A	N	V	I	K	Y	G	L	P	I	.	.	.	.	.	.	G	Y	A	L	A	D	I	A	A	G	V	H	V	H	A	H
Query Conservation														.	.																																													.	.	.	.	.	.
Alig confidence														.	.											.												.																						.	.	.	.	.	.
Template Conservation																										.												.
Template Sequence		D	P	Q	Q	D	F	A	F	S	I	D	R	C	S	D	V	T	T	H	T	F	D	I	R	.	A	A	M	V	L	R	Q	S	I	K	E	.	L	Y	A	K	V	D	L	I	I	N	G	K	T	V	L	S	Y	S	E	T	L	C	G	P	G	L	S	K	L	I	F	C	G	K	K	K	G	E	H	L	Y	Y	E
Template Known Secondary structure			T	T								S	S	G	G	G	G	G	S	S						.						S	S			S	S	.										T	T												S	T	T					T	T	T	T			T	T
Template Predicted Secondary structure																										.												.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		79
Predicted Secondary structure
Query SS confidence
Query Sequence		N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		119

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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