Job Description P42604 Confidence 35.05% Date Thu Jan 5 12:01:48 GMT 2012 Rank 28 Aligned Residues 84 % Identity 14% Template c2z64C_ PDB info PDB header:immune system Chain: C: PDB Molecule:lymphocyte antigen 96; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex Resolution 2.84 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.							.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.																																															.	.	.	.	.	.
Query SS confidence														.	.																																															.	.	.	.	.	.
Query Sequence		H	A	L	D	N	V	A	V	A	L	A	D	.	.	L	A	E	G	T	E	V	S	V	D	N	Q	T	V	T	L	R	Q	D	V	A	R	G	H	K	F	A	L	T	D	I	A	K	G	A	N	V	I	K	Y	G	L	P	I	G	Y	.	.	.	.	.	.	A	L	A	D	I	A	A	G	V	H	V	H	A	H
Query Conservation														.	.																																															.	.	.	.	.	.
Alig confidence														.	.											.													.																							.	.	.	.	.	.
Template Conservation																										.													.
Template Sequence		H	L	K	F	P	I	S	I	S	S	E	P	C	I	R	L	R	G	T	N	G	F	V	H	.	V	E	F	I	P	R	G	N	L	K	Y	L	.	Y	F	N	L	F	I	S	V	N	S	I	E	L	P	K	R	K	E	V	L	C	H	G	H	D	D	D	Y	S	F	C	R	A	L	K	G	E	T	V	N	T	S
Template Known Secondary structure		S											S				S	S								.						S	S			T	T		.									T	T													S	S	S		S	S	G	G	G	G			T	T
Template Predicted Secondary structure																										.													.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
			79	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	N	T	R	T	N	L	S	D	L	D	Q	Y	R	Y
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		I	P	F	S	F	E	G	I	L	F	P	K	G	H	Y
Template Known Secondary structure										S	S			S
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions