Job Description P42604 Confidence 14.02% Date Thu Jan 5 12:01:48 GMT 2012 Rank 89 Aligned Residues 60 % Identity 18% Template c2e59A_ PDB info PDB header:lipid binding protein Chain: A: PDB Molecule:lymphocyte antigen 96; PDBTitle: crystal structure of human md-2 in complex with lipid iva Resolution 2.21 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.							.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.
Query Sequence		D	L	A	E	G	T	E	V	S	V	D	N	Q	T	V	T	L	R	Q	D	V	A	R	G	H	K	F	A	L	T	D	I	A	K	G	A	N	V	I	K	Y	G	L	P	I	G	Y	.	.	.	.	.	.	A	L	A	D	I	A	A	G	V	H	V	H	A	H	N
Query Conservation																																																	.	.	.	.	.	.
Alig confidence													.										.																										.	.	.	.	.	.
Template Conservation													.										.
Template Sequence		I	E	L	K	G	S	K	G	L	L	H	.	I	F	Y	I	P	R	R	D	L	.	K	Q	L	Y	F	N	L	Y	I	T	V	N	T	M	N	L	P	K	R	K	E	V	I	C	R	G	S	D	D	D	Y	S	F	C	R	A	L	K	G	E	T	V	N	T	T	I
Template Known Secondary structure				T	T								.						S	S			.	T	T										T	T										S	S		S	S	S	S	S		G	G	G	G			T	T
Template Predicted Secondary structure													.										.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions