Job Description Q46938 Confidence 100.00% Date Thu Jan 5 12:35:57 GMT 2012 Rank 2 Aligned Residues 252 % Identity 54% Template d1ywka1 SCOP info Double-stranded beta-helix RmlC-like cupins KduI-like Resolution 2.95

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	V	R	Q	S	I	H	S	A	H	A	K	T	L	D	T	Q	G	L	R	N	E	F	L	V	E	K	V	F	V	A	D	E	Y	T	M	V	Y	S	H	I	D	R	I	I	V	G	G	I	M	P	I	T	K	T	V	S	V	G	G	E	V	G	K	Q	L	G	V	S	Y	F	L	E	R	R	E	L	G	V
Query Conservation
Alig confidence																																																													.	.
Template Conservation																																																													.	.
Template Sequence		M	E	T	R	Y	T	H	S	P	A	D	I	R	H	Y	S	T	E	Q	L	R	D	E	F	L	V	E	K	V	F	I	P	G	A	I	S	L	T	Y	T	H	N	D	R	M	I	F	G	G	V	T	P	T	T	E	E	L	E	I	.	.	I	L	D	K	E	L	G	V	D	Y	F	L	E	R	R	E	L	G	V
Template Known Secondary structure														T	T													S		S			T	T	S							T	T	T	T									S	S	S					.	.			S	G	G	G	T	S	S	S	T	T	T	T
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		1001	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.			1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	I	G	G	A	G	T	I	T	V	D	G	Q	C	Y	E	I	G	H	R	D	A	L	Y	V	G	K	G	A	K	E	V	V	F	A	S	I	D	T	G	T	P	A	K	F	Y	Y	N	C	A	P	A	H	T	T	Y	P	T	K	K	V	T	P	D	E	V	S	P	V	T	L	G	D	N	L	T	S	N	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	I	G	G	P	G	F	I	E	I	D	G	A	K	E	T	M	K	K	Q	D	G	Y	Y	I	G	K	E	T	K	H	V	R	F	S	S	E	N	P	D	N	P	A	K	F	Y	I	S	C	V	P	A	H	H	K	Y	P	N	V	K	I	S	I	D	E	I	T	P	M	E	T	G	D	P	L	T	L	N	Q
Template Known Secondary structure					S	S							T	T							T	T							T	T									S		T	T	S												S	S									T	T	T						B			G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		1079	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	I	N	K	Y	F	V	P	D	V	L	E	T	C	Q	L	S	M	G	L	T	E	L	A	P	G	N	L	W	N	T	M	P	C	H	T	H	E	R	R	M	E	V	Y	F	Y	F	N	M	D	D	D	A	C	V	F	H	M	M	G	Q	P	Q	E	T	R	H	I	V	M	H	N	E	Q	A	V	I	S	P
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.
Template Sequence		R	K	I	Y	Q	Y	I	H	P	N	V	C	E	S	C	Q	L	Q	M	G	Y	T	I	L	E	P	G	S	A	W	N	T	.	.	.	.	.	.	.	.	R	M	E	A	Y	V	Y	F	D	M	E	E	D	T	R	I	F	H	M	M	G	K	P	D	E	T	K	H	L	V	M	S	N	E	Q	A	A	I	S	P
Template Known Secondary structure									S	T	T	T				S	S										T	T						.	.	.	.	.	.	.	.									S			T	T								S	S	T	T	S								T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.
Template SS confidence
		1159	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190									.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	S	I	H	S	G	V	G	T	K	A	Y	T	F	I	W	G	M	V	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	W	S	I	H	S	G	V	G	T	S	N	Y	S	F	I	W	A	M	C	G	E
Template Known Secondary structure		T	T	S							S	S
Template Predicted Secondary structure
Template SS confidence
		1239	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions