Job Description Q46938 Confidence 57.93% Date Thu Jan 5 12:35:57 GMT 2012 Rank 83 Aligned Residues 180 % Identity 17% Template c3qacA_ PDB info PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. Resolution 2.27 Å

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		80	.	.	.	.	.	.	.	.	.	90	.	.													.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.											110	.	.	.	.	.	.	.	.	.	120	.	.										.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Query Sequence		V	I	N	I	G	G	A	G	T	I	T	V	D	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	C	Y	E	I	G	H	R	D	A	L	Y	V	G	K	G	.	.	.	.	.	.	.	.	.	.	A	K	E	V	V	F	A	S	I	D	T	G	T	.	.	.	.	.	.	.	.	.	P	A	K	F	Y	Y
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	Y	I	E	Q	G	N	G	I	T	G	M	M	I	P	G	C	P	E	T	Y	Q	D	Q	H	Q	K	I	R	H	L	R	E	G	D	I	F	A	M	P	A	G	V	S	H	W	A	Y	N	N	G	D	Q	P	L	V	A	V	I	L	I	D	T	A	N	H	A	N	Q	L	D	K	N	F	P	T	R	F	Y	L
Template Known Secondary structure																T	T																	T	T							T	T									S	S	S										T	T	S	T	T			S		S	S	S						S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		129	130	.	.	.	.	.	.	.	.																												.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	C	A	P	A	H	T	T	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	K	K	V	T	P	D	E	V	S	P	V	T	L	G	D	N	L	T	S	N	R	R	T	I	N	K	Y	F	V	P	D	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	K	P	Q	Q	E	H	S	N	T	G	N	I	F	R	G	F	E	T	R	L	L	A	E	S	F	G	V	S	E	E	I	A	Q	K	L	Q	A	E	Q	D	D	R	G	N	I	V	R	V	E	G	L	H	T	I	C	S	A	R	L	A	V	N	V	D	D	P	S	K	A	D	V	Y	T	P	E	A	G	R
Template Known Secondary structure		S	S					S							G	G	G	G	S										T											T	T	T			S		S										T	T	T	S						T	T		T	T	T		S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
												171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	V	L	E	T	C	Q	L	S	M	G	L	T	E	L	A	P	G	N	L	W	N	T	M	P	C	H	T	H	E	R	R	M	E	V	Y	F	Y	F	N	M	D	D	D	A	C	V	F	H	M	M	G	Q	P	Q	E	T	R	H	I	V	M	H	N	E	Q	A	V	I	S	P
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																			.	.	.																					.	.
Template Conservation																														.	.	.																					.	.
Template Sequence		L	T	T	V	N	S	F	N	L	P	I	L	R	H	L	R	L	S	A	A	K	G	V	L	Y	R	N	A	.	.	.	M	M	A	P	H	Y	N	L	N	A	H	N	I	M	Y	C	V	R	G	R	.	.	G	R	I	Q	I	V	N	D	Q	G	Q	S	V	F	D	E	E	L	S	R	G	Q	L	V	V	V	P
Template Known Secondary structure							T	T	T	S	T	T					T										T	T		.	.	.								S	S												.	.								T	T	S										T	T
Template Predicted Secondary structure																														.	.	.																					.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.				.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	S	I	H	S	G	V	G	T	K	A	Y	T	F	I	W	G	M	V	G	E	N	Q	V
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		Q	N	F	A	I	V	K	Q	A	F	E	D	.	G	F	E	W	V	S	F	K	T	S	E	N
Template Known Secondary structure		T	T											.									S	S	T	T
Template Predicted Secondary structure														.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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