Job Description Q46938 Confidence 83.81% Date Thu Jan 5 12:35:57 GMT 2012 Rank 71 Aligned Residues 173 % Identity 21% Template c3kglB_ PDB info PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus Resolution 2.98 Å

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		80	.	.	.	.	.	.	.	.	.	90	.								.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.											110	.	.	.	.	.	.	.	.	.	120	.	.									.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure														.	.	.	.	.	.	.				.	.																.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.				.	.																.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query Sequence		V	I	N	I	G	G	A	G	T	I	T	V	.	.	.	.	.	.	.	D	G	Q	.	.	C	Y	E	I	G	H	R	D	A	L	Y	V	G	K	G	.	.	.	.	.	.	.	.	.	.	A	K	E	V	V	F	A	S	I	D	T	G	T	.	.	.	.	.	.	.	.	P	A	K	F	Y	Y	N	C	A	P
Query Conservation														.	.	.	.	.	.	.				.	.																.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.				.	.																.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	F	V	A	K	G	E	G	L	M	G	R	V	V	P	G	C	A	E	D	M	H	Q	K	V	E	H	I	R	T	G	D	T	I	A	T	H	P	G	V	A	Q	W	F	Y	N	D	G	N	Q	P	L	V	I	V	S	V	L	D	L	A	S	H	Q	N	Q	L	D	R	N	P	R	P	F	Y	L	A	G	N	N
Template Known Secondary structure							S									S	S	S						S							T	T							T	T									S	S	S										S	S	S	T	T			S		S	S						S	S			B
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		133	.	.	.																																														.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	H	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	P	T	K	K	V	T	P	D	E	V	S	P	V	T	L	G	D	N	L	T	S	N	R	R	T	I	N	K	Y	F
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Q	G	Q	V	W	I	E	G	R	E	Q	Q	P	Q	K	N	I	L	N	G	F	T	P	E	V	L	A	K	A	F	K	I	D	V	R	T	A	Q	Q	L	Q	N	Q	Q	D	N	R	G	N	I	I	R	V	Q	G	P	F	S	V	I	R	P	P	L	R	S	E	T	I	C	S	A	R	C	T	D	N	L	D
Template Known Secondary structure		T	T			T	T	S	T	T			S			B			G	G	G	G	S										T									T	T	T	T	T			S		S					S	S				S	S				S						S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		168	.	170																						.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	E	T	C	Q	L	S	M	G	L	T	E	L	A	P	G	N	L	W	N	T	M	P	C	H	T	H	E	R	R	M	E	V	Y	F	Y	F	N	M	D	D	D	A	C	V	F	H	M	M	G	Q	P	Q	E	T
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.																.	.
Template Conservation																																												.	.	.																.	.
Template Sequence		D	P	S	N	A	D	V	Y	K	P	Q	L	G	Y	I	S	T	L	N	S	Y	D	L	P	I	L	R	F	L	R	L	S	A	L	R	G	S	I	R	Q	N	A	.	.	.	M	V	L	P	Q	W	N	A	N	A	N	A	V	L	Y	.	.	V	T	D	G	E	A	H	V	Q	V	V	N	D	N	G	D	R	V
Template Known Secondary structure			G	G	G		S				T	T	T								T	T	T		T	T					T										T	T		.	.	.								S	S							.	.				S									T	T	S
Template Predicted Secondary structure																																												.	.	.																.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.				.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	I	V	M	H	N	E	Q	A	V	I	S	P	S	W	S	I	H	S	G	V	G	T	K	A	Y	T	F	I	W	G
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		F	D	G	Q	V	S	Q	G	Q	L	L	S	I	P	Q	G	F	S	V	V	K	R	A	.	T	S	E	Q	F	R	W	I
Template Known Secondary structure								T	T							T	T								.		S	S
Template Predicted Secondary structure																									.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions