Job Description Q46938 Confidence 87.56% Date Thu Jan 5 12:35:57 GMT 2012 Rank 64 Aligned Residues 171 % Identity 15% Template c1uijA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) Resolution 2.50 Å

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		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.					.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	G	V	I	N	I	G	G	A	G	T	I	T	V	.	.	.	.	D	G	Q	C	Y	E	I	G	H	R	D	A	L	Y	V	G	K	G	A	K	E	V	V	F	A	S	I	D	T	G	T	P	A	K	F	Y	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	L	L	F	V	L	S	G	R	A	I	L	T	L	V	N	N	D	D	R	D	S	Y	N	L	H	P	G	D	A	Q	R	I	P	A	G	T	T	Y	Y	L	V	N	P	H	D	H	Q	N	L	K	M	I	W	L	A	I	P	V	N	K	P	G	R	Y	D	D	F	F	L	S	S	T	Q	A	Q	Q	S	Y
Template Known Secondary structure										S									S	S									T	T							T	T										S	S												S	S	B	T	T	B						S	S		B	S	S				G
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
																																																												130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	A	P	A	H	T	T	Y	P	T	K	K	V	T	P	D	E	V	S	P	V	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Q	G	F	S	H	N	I	L	E	T	S	F	H	S	E	F	E	E	I	N	R	V	L	F	G	E	E	E	E	Q	R	Q	Q	E	G	V	I	V	E	L	S	K	E	Q	I	R	Q	L	S	R	R	A	K	S	S	S	R	K	T	I	S	S	E	D	E	P	F	N	L	R	S	R	N	P	I	Y	S	N	N
Template Known Secondary structure		G	G	G	S										T	S										T		T	T		G	G	G	S	B	S	S	S													T	S	S		B				G	G	G	G	G		S	S	S				T	T	S	S			S				S
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	D	N	L	T	S	N	R	R	T	I	N	K	Y	F	V	P	D	V	L	E	T	C	Q	L	S	M	G	L	T	E	L	A	P	G	N	L	W	N	T	M	P	C	H	T	H	E	R	R	M	E	V	Y	F	Y	F	N	M	D	D	D	A	C	V	F	H	M	M	G	Q	P	Q	E	T	R	H	I	V	M
Query Conservation
Alig confidence						.	.	.	.	.											.																		.	.	.
Template Conservation						.	.	.	.	.											.																		.	.	.
Template Sequence		F	G	K	F	.	.	.	.	.	F	E	I	T	P	E	K	N	P	Q	.	L	R	D	L	D	I	F	L	S	S	V	D	I	N	E	G	A	.	.	.	L	L	L	P	H	F	N	S	K	A	I	V	I	L	V	I	N	E	G	D	A	N	I	E	L	V	G	I	K	L	E	V	Q	R	Y	R	A	E	L	S
Template Known Secondary structure		S				.	.	.	.	.					T	T	T				.					T										T	T		.	.	.								S	S										S
Template Predicted Secondary structure						.	.	.	.	.											.																		.	.	.
Template SS confidence
		230	.	.	.						.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	E	Q	A	V	I	S	P	S	W	S	I	H	S	G	V	G	T	K	A	Y	T	F	I	W
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		E	D	D	V	F	V	I	P	A	A	.	Y	P	F	V	V	N	A	T	S	N	L	N	F	L	A
Template Known Secondary structure		T	T							T	T	.								S	S	S
Template Predicted Secondary structure												.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions