Job Description P32705 Confidence 99.25% Date Thu Jan 5 11:50:26 GMT 2012 Rank 4 Aligned Residues 423 % Identity 9% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		G	G	N	I	T	G	F	Q	N	G	L	A	I	A	G	D	Y	M	S	A	A	S	F	L	G	I	S	A	L	V	F	T	S	G	Y	D	G	L	I	Y	S	L	G	F	L	V	G	W	P	I	I	L	F	L	I	A	E	R	L	R	N	L	G	R	Y	.	T	F	A	D	V	A	S	Y	R	L	K	Q	G	P
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	V	S	N	A	G	P	I	A	F	I	H	K	A	I	G	D	N	I
Template Known Secondary structure					B																		T	T	T	S									G	G	G																								T	T				T	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		I	R	I	L	S	A	C	G	S	L	V	V	V	A	L	Y	L	I	A	Q	M	V	G	A	G	K	L	I	E	L	L	F	G	.	L	N	Y	H	I	A	V	V	L	V	G	V	L	M	M	M	Y	V	L	F	G	G	M	L	A	T	T	W	V	Q	I	I	K	A	V	L	L	L	F	G	A	S	F	M	A	F
Query Conservation																																			.
Alig confidence																																			.
Template Conservation
Template Sequence		I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L	L	I	L	G	L
Template Known Secondary structure																																	T	T																										T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		M	V	M	K	H	V	G	F	S	F	N	N	L	F	S	E	A	M	A	V	H	P	K	G	V	D	I	M	K	P	G	G	L	V	K	D	P	I	S	A	L	S	L	G	L	G	L	M	F	G	T	A	G	L	P	H	I	L	M	R	F	F	T	V	S	D	A	.	R	E	A	R	K	S	V	F	Y	A	T	G
Query Conservation																																																																					.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	F	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I	L
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G	T	S				S														G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.															170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	M	G	Y	F	Y	I	L	T	F	I	I	G	F	G	A	I	M	L	V	G	A	N	P	E	Y	K	D	A	A	G	H	L	I	G	G	N	N	M	A	A	V	H	L	A	N	A	V	G	G	N	L	F	L	G	F	I	S	A	V	A	F	A	T	I	L	A	V	V	A	G	L	T	L	A	G	A	S	A	V
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	M	F	V	Y	V	G	V	A	I	S	A	I	G	N	L	.	.	.	.	.	.	.	.	.	.	.	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A
Template Known Secondary structure																T	T	S	.	.	.	.	.	.	.	.	.	.	.								T	G	G	G																																			T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.												.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	D	L	Y	A	N	V	F	K	K	G	A	T	E	R	E	E	L	R	V	S	K	I	T	V	L	I	L	G	V	I	A	I	I	L	G	V	L	F	E	N	Q	N	I	A	F	M	V	G	L	A	F	A	I	A	A	S	C	N	F	P	I	I	L	L	S	M	Y	W	S	K	L	T	T	R	G	A	M	M
Query Conservation
Alig confidence																																								.	.
Template Conservation																																								.	.
Template Sequence		Y	S	L	A	K	D	G	E	L	P	E	F	F	E	R	K	V	W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	.	.	F	N	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	K	E	I	V	I
Template Known Secondary structure								S	S			S	S			T	T	S			S		T																	.	.	S																											T
Template Predicted Secondary structure																																								.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	W	L	G	L	I	T	A	V	V	L	M	I	L	G	P	T	I	W	V	Q	I	L	G	H	E	K	A	I	F	P	Y	E	Y	P	A	L	F	S	I	T	V	A	F	L	G	I	W	F	F	S	A	T	D	N	S	A	E	G	A	R	E
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.
Template Sequence		F	S	F	I	V	V	L	G	V	F	L	L	L	L	Y	Y	Q	W	I	T	N	R	F	.	.	.	.	.	.	.	.	.	.	V	F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I	I	Y	R	K	V	T	K	R	T	F	S	N	N
Template Known Secondary structure																									.	.	.	.	.	.	.	.	.	.																													G	G
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400											.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430