Job Description P32705 Confidence 100.00% Date Thu Jan 5 11:50:26 GMT 2012 Rank 2 Aligned Residues 460 % Identity 14% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	R	V	R	S	R	S	D	Y	Y	T	A	G	G	N	I	T	G	F	Q	N	G	L	A	I	A	G	D	Y	M	S	A	A	S	F	L	G	I	S	A	L	V	F	T	S	G	Y	D	G	L	I	Y	S	L	G	F	L	V	G	W	P	I	I	L	F	L	I	A	E	R	L	R	N	L	G	R	Y	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	X	X	X	X	X	X	X	X	X	X	X	A	G	K	S	L	P	W	W	A	V	G	A	S	L	I	A	A	N	I	S	A	E	Q	F	I	G	M	S	G	S	G	Y	S	I	G	L	A	I	A	S	Y	E	W	M	S	A	I	T	L	I	I	V	G	K	Y	F	L	P	I	F	I	E	K	G	I	Y	T	I
Template Known Secondary structure																S																	S					T									T		G	G	G																		T							T	T			S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	V	A	S	Y	R	L	K	Q	G	P	I	R	I	L	S	A	C	G	S	L	V	V	V	A	L	Y	L	I	A	Q	M	V	G	A	G	K	L	I	E	L	L	F	G	L	N	Y	H	I	A	V	V	L	V	G	V	L	M	M	M	Y	V	L	F	G	G	M	L	A	T	T	W	V	Q	I	I	K	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	F	V	E	K	R	F	N	K	K	L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L	A	L	E	T	I	L	G	I	P	L	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	V	V	W	T	D	V	I	Q	V	F	F	L	V	L	G	G
Template Known Secondary structure									T																			T																	T	T																	T	T				S
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		L	L	L	F	G	A	S	F	M	A	F	M	V	M	K	H	V	G	F	S	F	N	N	L	F	S	E	A	M	A	V	H	P	K	G	V	D	I	M	K	P	G	G	L	V	K	D	P	I	S	.	.	A	L	S	L	G	L	G	L	M	F	G	T	A	G	L	P	H	I	L	M	R	F	F	T	V	S	D	A
Query Conservation																																																				.	.
Alig confidence																																																				.	.
Template Conservation
Template Sequence		F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q	Y	I	I	Q	R	T	L	A	A	K	S	V
Template Known Secondary structure														T	T	S														G	G	G	G		S	S			S	S	S	S	G	G	G	G	S		T	T					S	T									T	T	T	T									S	S	S
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.						.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.
Query SS confidence																																						.	.	.	.	.
Query Sequence		R	E	A	R	K	S	V	F	Y	A	T	G	F	M	G	Y	F	Y	I	L	T	F	I	I	G	F	G	A	I	M	L	V	G	A	N	P	.	.	.	.	.	E	Y	K	D	A	A	G	H	L	I	G	G	N	N	M	A	A	V	H	L	A	N	A	V	G	G	N	L	F	L	G	F	I	S	A	V	A	F	A
Query Conservation																																						.	.	.	.	.
Alig confidence																																						.	.	.	.	.
Template Conservation
Template Sequence		S	E	A	Q	K	G	I	V	F	A	A	F	L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K	G	V	V	F	A	A	L	A	A
Template Known Secondary structure																		G	G	G	T	T																						T	T			S					S	S	S	G	G	G							T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		T	I	L	A	V	V	A	G	L	T	L	A	G	A	S	A	V	S	H	D	L	Y	A	N	V	F	K	K	G	A	T	E	R	E	E	L	R	V	S	K	I	T	V	L	I	L	G	V	I	A	I	I	L	G	V	L	F	E	N	.	Q	N	I	A	F	M	V	G	L	A	F	A	I	A	A	S	C	N	F	P
Query Conservation																																																													.
Alig confidence																																																													.
Template Conservation
Template Sequence		A	I	V	S	S	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L	I	A	P	M	L	G	G	I	G	Q	A	F	Q	Y	I	Q	E	Y	T	G	L	V	S	P	G	I	L	A
Template Known Secondary structure																						T							S		S		S	S																					G	G	G	G	G	G		S											T	T	T
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	L	L	S	M	Y	W	S	K	L	T	T	R	G	A	M	M	G	G	W	L	G	L	I	T	A	V	V	L	M	I	L	G	P	T	I	W	V	Q	I	L	G	H	E	K	A	I	F	P	Y	E	Y	P	A	L	F	S	I	T	V	A	F	L	G	I	W	F	F	S	A	T	D	N	S	A	E	G	A	R
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	L	L	G	L	F	W	K	K	T	T	S	K	G	A	I	I	G	V	V	A	S	I	P	F	A	L	F	L	K	F	M	P	L	S	M	P	F	.	.	.	.	.	.	.	.	.	.	.	.	M	D	Q	M	L	Y	T	L	L	F	T	M	V	V	I	A	F	T	S	L	S	T	S	I	N	D	D	D	P
Template Known Secondary structure										T	T																						T	S	S	S					.	.	.	.	.	.	.	.	.	.	.	.																					T	T		S	S	S	S		T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.													480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.