Job Description P32705 Confidence 97.04% Date Thu Jan 5 11:50:26 GMT 2012 Rank 6 Aligned Residues 423 % Identity 13% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.						.	.	.
Query SS confidence																																																		.	.						.	.	.
Query Sequence		V	L	T	A	L	A	A	T	L	P	F	A	A	N	A	A	D	A	I	S	G	A	V	E	R	Q	P	T	N	W	Q	A	I	I	M	F	L	I	F	V	V	F	T	L	G	I	T	Y	.	.	W	A	S	K	R	.	.	.	V	R	S	R	S	D	Y	Y	T	A	G	G	N	I	T	G	F	Q	N	G	L	A
Query Conservation																																																		.	.						.	.	.
Alig confidence																																																		.	.						.	.	.										.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.
Template Sequence		A	T	V	V	W	G	I	G	F	K	D	S	F	T	N	F	A	S	S	A	L	S	A	V	V	D	N	L	G	W	A	F	I	L	F	G	T	V	F	V	F	F	I	V	V	I	A	A	S	K	F	G	T	I	R	L	G	R	I	D	E	A	P	E	F	R	T	.	.	.	.	.	.	V	S	W	I	S	X	X
Template Known Secondary structure									S	S	S										T	T							T																					S	G	G	G	G			S	S	S	T	T				S	S			.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.							.	140	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100																	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.																.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.																.	.	.
Query Sequence		I	A	G	D	Y	M	S	A	A	S	F	L	G	I	S	A	L	V	F	T	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	G	L	I	Y	S	L	G	F	L	V	G	W	P	I	I	L	F	L	I	A	E	.	R	L	R	N	L	G	R	Y	T	F	A	D	V	A	S	.	.	.
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.																.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.																.	.	.
Template Conservation
Template Sequence		F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I
Template Known Secondary structure																								T			T	T	S		S	S														S																		T	T	T	S				S	S	G	G	G	G	G	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
				139	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.					.	.	.																																																												.	.	.	.
Query SS confidence		.	.					.	.	.																																																												.	.	.	.
Query Sequence		.	.	Y	R	L	K	.	.	.	Q	G	P	I	R	I	L	S	A	C	G	S	L	V	V	V	A	L	Y	L	I	A	Q	M	V	G	A	G	K	L	I	E	L	L	F	G	L	N	Y	H	I	A	V	V	L	V	G	V	L	M	M	M	Y	V	L	F	G	G	M	.	.	.	.	L	A	T	T	W	V	Q	I
Query Conservation		.	.					.	.	.																																																												.	.	.	.
Alig confidence		.	.					.	.	.																																																												.	.	.	.
Template Conservation
Template Sequence		G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N
Template Known Secondary structure			T	T	T			S	S	S	S																															T	T	T	S																			T	T	G	G	G	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.						.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																			.	.	.	.	.																														.	.	.
Query SS confidence																			.	.	.	.	.																														.	.	.
Query Sequence		I	K	A	V	L	L	L	F	G	A	S	F	M	A	F	M	V	.	.	.	.	.	M	K	H	V	G	F	S	F	N	N	L	F	S	E	A	M	A	V	H	P	K	G	V	D	I	M	K	P	G	.	.	.	G	L	V	K	D	P	I	S	A	L	S	L	G	L	G	L	M	F	G	T	A	G	L	P	H	I
Query Conservation																			.	.	.	.	.																														.	.	.
Alig confidence																			.	.	.	.	.																														.	.	.																					.	.	.
Template Conservation																																																																												.	.	.
Template Sequence		A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F	Y	W	A	W	W	I	S	W	S	P	F	V	.	.	.	G	X	F
Template Known Secondary structure																		S																									T			T	T	T	T	S	S								T	T										T	T					.	.	.
Template Predicted Secondary structure																																																																												.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.				.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	R	F	F	T	V	S	D	A	R	E	A	R	K	S	V	F	Y	A	T	G	F	M	G	Y	F	Y	I	L	T	F	I	I	G	F	G	A	I	M	L	V	G	A	N	P	E	Y	K	D	A	A	G	H	L	I	G	G	N	N	M	A	A	V	H	L	A	N	A	V	G	G	N	L	F	L	G	F	I	S
Query Conservation
Alig confidence																					.																									.	.	.	.	.
Template Conservation																					.																									.	.	.	.	.
Template Sequence		L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	.	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	.	.	.	.	.	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A	X
Template Known Secondary structure						T	T	T													.																								T	.	.	.	.	.						T	T		S										T	S	T	T
Template Predicted Secondary structure																					.																									.	.	.	.	.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.						.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	A	F	A	T	I	L	A	V	V	A	G	L	T	L	A	G	A	S	A	V	S	H	D	L	Y	A	N	V	F	K	K	G	A	T	E	R	E	E	L	R	V	S	K	I	T	V	L	I	L	G	V	I	A	I	I	L	G	V	L	F	E	N	Q	N	I	A	F	M	V	G	L	A	F	A	I	A	A	S
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.																											.	.	.
Template Conservation																											.	.	.	.	.	.	.	.																											.	.	.
Template Sequence		I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	.	.	.	.	.	.	.	.	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	.	.	.	G	G	D	N	A	L	S	N	L	Q	N	V	T	I	V	A	A	T
Template Known Secondary structure																							T	T	T	T	.	.	.	.	.	.	.	.		S	S																								.	.	.		G	G	G
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.																											.	.	.
Template SS confidence
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.									.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.				510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
		442	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	N	F	P	I	I	L	L	S	M	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	L	F	V	V	I	G	L	X	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		528	.	530	.	.	.	.	.	.	.	.