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Job DescriptionP32705
Confidence99.38%DateThu Jan 5 11:50:26 GMT 2012
Rank3Aligned Residues431
% Identity12%Templatec2jlnA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   66...70.........80.........90.........100......... 110.........120.........130.........140....
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Query Sequence  AGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSLG. FLVGWPIILFLIAERLRNLGRYTFADVASYRLKQG
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Template Sequence  AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG. INFTVAARMPFG. I
Template Known Secondary structure  GG

B

STTTTS
T
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TTTTS
.T
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   23......30.........40.........50.........60.........70.........80....... ..90......... 100
 
   145....150.........160.........170........ .180.........190.........200.........210.........220
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Query Sequence  PIRILSACGSLVVVALYLIAQMVGAGKLIELLFG. . . . LNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFGAS
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Template Conservation                    
         
                  
   
                 
         
Template Sequence  RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGV
Template Known Secondary structure  TTT



TT
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   101........110.........120.........130.........140.........150.........160.........170.........180
 
   221........230.........240.........250.........260.........270.........280.........290.........300
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Query Sequence  FMAFMVMKHVGFSFNNLFSEAMAVHPKGVDIMKPGGLVKDPISALSLGLGLMFGTAGLPHILMRFFTVSDAREARKSVFY
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Template Sequence  YMVYLMLDGADV. . . . . . . . . . . SLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVK. . ECKVDPNASREGQTK
Template Known Secondary structure  T
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TT


SS

S
TTTTTTT..TB


TT

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   181........190.. .......200.........210.........220.........230.. .......240.......
 
   301........310.........320.........330.........340.........350.........360.........370.........380
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Query Sequence  ATGFMGYFYILTFIIGFGAIMLVGANPEYKDAAGHLIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGA
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Template Sequence  ADARYATAQWLGMVPASIIFGFIG. . . . . . . . AASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANL
Template Known Secondary structure  ........S
S
T


TTT
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   248.250.........260.........270. ........280.........290.........300.........310.........
 
   381........390.........400.........410.........420.........430.........440.........450.........460
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Query Sequence  SAVSHDLYANVFKKGATEREELRVSKITVLILGVIAIILGVLFENQNIAFMVGLAFAIAASCNFPIILLSMYWSKLTTRG
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Template Sequence  LSPAYTL. CSTFPRVFTFK. . . . . . . TGVIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISL
Template Known Secondary structure  .STTT

.......T
GGGTTTTTSTT


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   320...... ...330....... ..340.........350.........360.........370.........380.........390.
 
   461.... ....470.........480.........490.........500.........510.........520........
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Query Sequence  AMMGG. . . . . . . . . . . . WLGLITAVVLMILGPTIWVQILGHEKAIFPYEYPALFSITVAFLGIWFFSATDNSAEGARERE
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Template Sequence  HDLYRTKGIYTYWRGVNWVALAVYAVALAVSFLTPD. . . . . . . . . . . . . LMFVTGLIAALLLHIPAMRWVAKTFPLFSEA
Template Known Secondary structure  TBSSSTT
TBTTB
T
GG.............GTTTS
S

GG
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   392.......400.........410.........420....... ..430.........440.........450........
 
   529530.........540
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Query Sequence  LFRAQFIRSQTG
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Template Conservation              
Template Sequence  ESRNEDYLRPIG
Template Known Secondary structure  GGGS


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   459460.........470
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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