 |
Job Description | P31131 | Confidence | 8.37% | Date | Thu Jan 5 11:47:15 GMT 2012 |
Rank | 27 | Aligned Residues | 71 |
% Identity | 17% | Template | c1zpdA_ |
PDB info |
PDB header:alcohol fermentation | Chain: A: PDB Molecule:pyruvate decarboxylase; |
PDBTitle: pyruvate decarboxylase from zymomonas mobilis
|
Resolution | 1.86 Å |
|
 |
  |   |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | L | T | S | A | L | S | Q | R | L | I | A | D | Q | L | R | L | T | T | A | E | S | C | T | G | G | K | L | A | S | A | L | C | A | A | E | D | T | P | K | F | Y | G | A | G | F | V | T | F | T | D | Q | A | K | M | K | I | L | S | V | S | Q | Q | S | L | E | R | Y | S | A | V | S | E | K | V | A | A | E | M | A |
Query Conservation |   |
  |
|
|   |   |
|   |   |
|
|   |   |   |   |   |
|
|
|   |
|
|
|   |
|
|
|
|
|
|
|   |
|
|   |
|
|
|
|
|   |
|
|   |
|
|   |
|   |
|
|   |   |   |
|   |   |   |
|
|
|   |   |   |   |
|   |   |   |
|   |
|
|   |
|
|
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|   |   |   |
|   |   |   |
|
|   |   |
|
| . | . |
|   |
|
|   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |   |
|   |   |
|   |   |   |
|
Template Sequence |   |
T | V | G | T | Y | L | A | E | R | L | V | Q | I | G | L | K | H | H | F | . |
. |
A | V | A | G | D | Y | N | L | V | L | L | D | N | L | L | L | N | K | N | M | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | Q | V | Y | C | C | N | E | L | N | C | G | F | S | A |
Template Known Secondary structure |   |
B |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  | . | . |  |
|
|
| T | T | T |  |  |  |  |  |  |  |  | T |
| T | T | S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . | . |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | |
|
. | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . |
  |
  |   |
99 | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | G | A | I | E | R | A | D | A | D | V | S | I | A | I | T | G |
Query Conservation |   |
  |
|   |   |   |   |   |   |
|
|   |
|
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|   |
|
|   |   |   |
|   |   |
|   |
|
Template Sequence |   |
E | G | Y | A | R | A | K | G | A | A | A | A | V | V | T | Y | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | S |
|  |  |  |  |  |
| T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
58 | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|