Return to main results Retrieve Phyre Job Id

Job DescriptionP39280
Confidence78.64%DateThu Jan 5 11:58:50 GMT 2012
Rank18Aligned Residues137
% Identity10%Templatec3daqB_
PDB info PDB header:lyaseChain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus
Resolution1.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   133......140.........150.........160.... .....170.........180.........190.........200.........210
Predicted Secondary structure 













..



















Query SS confidence 































. .













































Query Sequence  PYAENQGNKRNWQTALEYVAAHPELDEMIFSG. . GDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITEALV
Query Conservation           
 
   
  
     
 





..



      
  

  
  
  
  


 
      
 

   

Alig confidence 





















.








..








































..


Template Conservation 

  
 

       
  
   .

 

   




   

  

  
             

 

   
    
..  
Template Sequence  PFTNNKVNLEALKAHVNFLLEN. NAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSI. . QAS
Template Known Secondary structure 
TT
T.T

SSGGGTGGGS
TTSS



S
..
Template Predicted Secondary structure 








.



















..
Template SS confidence 















































































   15....20.........30...... ...40.........50.........60.........70.........80........ .90.
 
   211........220.........230.........240...... ... 250.........260.........270..
Predicted Secondary structure 











.

.





Query SS confidence 



































.


.






















Query Sequence  ECFARSTLQILLVNHINHANEVDETFRQAMAKLRRV. GVT. LLNQSVLLRDVNDNAQTLANLSN
Query Conservation    
      
    
  
  


     

  
   .
  .
  




 



  
 
  
  
Alig confidence 



































.


.






















Template Conservation    
   


 


  
 
       
      

 
   





 
  

   
      
  
Template Sequence  IQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQ
Template Known Secondary structure  T
S


SS



S

S



T
Template Predicted Secondary structure 



























Template SS confidence 































































   92.......100.........110.........120.........130.........140.........150.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions