Job Description P39280 Confidence 24.80% Date Thu Jan 5 11:58:50 GMT 2012 Rank 102 Aligned Residues 176 % Identity 13% Template c2ftpA_ PDB info PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa Resolution 2.40 Å

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		127	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure											.																																				.	.
Query SS confidence											.																																				.	.
Query Sequence		C	F	R	R	H	F	P	Y	A	.	E	N	Q	G	N	K	R	N	W	Q	T	A	L	E	Y	V	A	A	H	P	E	L	D	E	M	I	F	S	G	G	D	P	L	M	A	.	.	K	D	H	E	L	D	W	L	L	T	Q	L	E	A	I	P	H	I	K	R	L	R	I	H	S	R	L	P	I	V	I	P	A
Query Conservation											.																																				.	.
Alig confidence											.																				.																.	.																												.	.	.	.	.	.
Template Conservation																															.																																													.	.	.	.	.	.
Template Sequence		V	G	P	R	D	G	L	Q	N	E	K	Q	P	I	E	V	A	D	K	I	R	L	V	D	D	L	S	A	A	.	G	L	D	Y	I	E	V	G	S	F	V	S	P	K	W	V	P	Q	M	A	G	S	A	E	V	F	A	G	I	R	Q	R	P	G	V	T	Y	A	A	L	A	P	N	L	.	.	.	.	.	.
Template Known Secondary structure			T	T	T					T	S	S	S																	T	.	T		S								S		T	T	T		G	G	G	T	T								S				T	T	S								S		.	.	.	.	.	.
Template Predicted Secondary structure																															.																																													.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.											.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.					.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.																																				.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.																																				.	.	.	.
Query Sequence		R	I	T	E	A	L	V	E	C	F	A	R	S	T	L	Q	I	L	L	V	N	H	I	N	.	.	.	.	.	.	.	.	.	.	H	A	N	E	V	D	E	T	F	R	Q	A	M	A	K	L	R	R	V	G	V	T	L	L	N	Q	S	V	L	L	R	D	V	N	D	.	.	.	.	N	A	Q	T	L	A	N
Query Conservation																										.	.	.	.	.	.	.	.	.	.																																				.	.	.	.
Alig confidence		.	.	.																						.	.	.	.	.	.	.	.	.	.																																				.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	K	G	F	E	A	A	L	E	S	G	V	K	E	V	A	V	F	A	A	A	S	E	A	F	S	Q	R	N	I	N	C	S	I	K	D	S	L	E	R	F	V	P	V	L	E	A	A	R	Q	H	Q	V	R	V	R	G	Y	I	S	C	V	L	G	C	P	Y	D	G	D	V	D	P	R	Q	V	A	W
Template Known Secondary structure		.	.	.									T	T										S										S	S																			T	T										T	T		B	T	T	T	B
Template Predicted Secondary structure		.	.	.
Template SS confidence
					85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	N	A	L	F	D	A	G	V	M	P	Y	Y	L	H	V	L	D	K	V	Q	G	A	A	H	F	M	V	S	D	D	E	A	R	Q	I	M	R	E	L	L	T	L	V	S	G	Y	L	V
Query Conservation
Alig confidence											.	.												.	.	.	.	.
Template Conservation											.	.												.	.	.	.	.
Template Sequence		V	A	R	E	L	Q	Q	M	G	.	.	C	Y	E	V	S	L	G	D	T	I	G	.	.	.	.	.	V	G	T	A	G	A	T	R	R	L	I	E	A	V	A	S	E	V	P	R	E	R	L
Template Known Secondary structure									T	T	.	.		S							S	S	S	.	.	.	.	.															T	T	T	S		G	G	G
Template Predicted Secondary structure											.	.												.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.						.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions