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Job DescriptionP77245
Confidence80.54%DateThu Jan 5 12:26:46 GMT 2012
Rank298Aligned Residues96
% Identity19%Templatec3ivpD_
PDB info PDB header:dna binding proteinChain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630.
Resolution2.02 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70.........80.........90.........100.....
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Query Sequence  QANVSELQSVSSRQMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKL
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Template Sequence  IKEARKKQGLTREQVGAXIEIDPRYLTNIENKGQHPSLQVLY. DLVSLLNVSVDEFFLPASSQVKS. . . . . . . . . . . . . .
Template Known Secondary structure  TT

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   17..20.........30.........40.........50........ .60.........70.........80.
 
   106...110.........120..... ....130........
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Query Sequence  NREKELALEQTCALLDYARL. . . QKIIEVISKAPFI
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Template Sequence  . . TKRRQLENKIDNFTDADLVIXESVADGIVKSKEV
Template Known Secondary structure  ..GGG

T

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   82.......90.........100.........110.....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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