Job Description P77245 Confidence 93.91% Date Thu Jan 5 12:26:46 GMT 2012 Rank 130 Aligned Residues 129 % Identity 14% Template c2v45A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand Resolution 2.40 Å

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		122	.	.	.	.	.	.	.	130	.	.	.	.							.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170																	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.																										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.																										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	R	L	Q	K	I	I	E	V	I	S	K	.	.	.	.	.	.	A	P	F	I	Q	I	T	G	L	G	G	S	A	L	V	G	R	D	L	S	F	K	L	M	K	.	.	I	G	Y	R	V	A	C	E	A	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	Q	A	T	V	S
Query Conservation															.	.	.	.	.	.																										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	A	L	D	L	M	A	S	R	F	R	S	S	I	D	M	Y	G	P	N	S	V	A	W	Y	G	S	G	Q	C	L	T	E	E	S	Y	V	A	N	K	I	F	K	G	G	F	G	T	N	N	V	D	G	N	P	R	L	C	M	A	S	A	V	G	G	Y	V	T	S	F	G	K	D	E	P	M	G	T	Y
Template Known Secondary structure																					G	G	G							T	T	S														T	T	T								G	G	G	G	T	T												S	S		S		S	S		G
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																													.	.	.	.
Query SS confidence																													.	.	.	.
Query Sequence		Q	A	L	K	K	G	D	V	Q	I	A	I	S	Y	S	G	S	K	K	E	I	V	L	C	A	E	A	.	.	.	.	A	R	K	Q	G	A	T	V	I	A	I	T	S	L	T	D	S	P	L	R	R	L	A	H	F	T	L	D	T	V	S	G	E	T	E	W	R	S	S	S	M	S	T	R	T	A	Q	N	S
Query Conservation																													.	.	.	.
Alig confidence																													.	.	.	.												.																									.	.	.	.	.	.	.	.	.
Template Conservation																																												.																									.	.	.	.	.	.	.	.	.
Template Sequence		A	D	I	D	Q	A	T	C	F	F	I	I	G	S	N	T	S	E	A	H	P	V	L	F	R	R	I	A	R	R	K	Q	V	E	P	G	V	K	I	I	V	A	.	D	P	R	R	T	N	T	S	R	I	A	D	M	H	V	A	F	R	P	G	T	D	L	A	.	.	.	.	.	.	.	.	.	F	M	H	S
Template Known Secondary structure		G	G	G	G	T		S						S							S															T	T							.		S	B			G	G	G	G	G		S							T	T					.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.																									.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.										.	.	230	.
		254	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	D	L	L	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	A	W	V	I	I	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions