Job Description P77245 Confidence 91.69% Date Thu Jan 5 12:26:46 GMT 2012 Rank 171 Aligned Residues 129 % Identity 15% Template c2nyaF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		122	.	.	.	.	.	.	.	130	.	.	.	.							.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170																	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.																										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.																										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	R	L	Q	K	I	I	E	V	I	S	K	.	.	.	.	.	.	A	P	F	I	Q	I	T	G	L	G	G	S	A	L	V	G	R	D	L	S	F	K	L	M	K	.	.	I	G	Y	R	V	A	C	E	A	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	Q	A	T	V	S
Query Conservation															.	.	.	.	.	.																										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Q	A	F	D	V	M	E	E	K	F	K	T	A	L	K	E	K	G	P	E	S	I	G	M	F	G	S	G	Q	W	T	I	W	E	G	Y	A	A	S	K	L	F	K	A	G	F	R	S	N	N	I	D	P	N	A	R	H	C	M	A	S	A	V	V	G	F	M	R	T	F	G	M	D	E	P	M	G	C	Y
Template Known Secondary structure																			T		G	G	G							T	T	S															T	S								G	G	G	G	T	T												S	S		S		S			G
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																													.	.	.	.
Query SS confidence																													.	.	.	.
Query Sequence		Q	A	L	K	K	G	D	V	Q	I	A	I	S	Y	S	G	S	K	K	E	I	V	L	C	A	E	A	.	.	.	.	A	R	K	Q	G	A	T	V	I	A	I	T	S	L	T	D	S	P	L	R	R	L	A	H	F	T	L	D	T	V	S	G	E	T	E	W	R	S	S	S	M	S	T	R	T	A	Q	N	S
Query Conservation																													.	.	.	.
Alig confidence																													.	.	.	.												.																									.	.	.	.	.	.	.	.	.
Template Conservation																																												.																									.	.	.	.	.	.	.	.	.
Template Sequence		D	D	I	E	Q	A	D	A	F	V	L	W	G	A	N	M	A	E	M	H	P	I	L	W	S	R	I	T	N	R	R	L	S	N	Q	N	V	T	V	A	V	L	.	S	T	Y	Q	H	R	S	F	E	L	A	D	N	G	I	I	F	T	P	Q	S	D	L	V	.	.	.	.	.	.	.	.	.	I	L	N	Y
Template Known Secondary structure		G	G	G	G	G		S						S							S													T		T	T							.		S	S	B		T	T	G	G	G		S							T	T	T				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.																									.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230										.	.	.	.
		254	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	D	L	L	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	N	Y	I	I	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions