Job Description P77245 Confidence 90.41% Date Thu Jan 5 12:26:46 GMT 2012 Rank 193 Aligned Residues 49 % Identity 14% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		S	E	F	T	E	N	E	Q	K	I	A	D	F	L	Q	A	N	V	S	E	L	Q	S	V	S	S	R	Q	M	A	K	Q	L	G	I	S	Q	S	S	I	V	K	F	A	.	.	.	.	Q	K	L	G	A	Q	G	F	T	E	L
Query Conservation																																														.	.	.	.
Alig confidence																		.	.	.	.	.	.																							.	.	.	.
Template Conservation																		.	.	.	.	.	.
Template Sequence		A	W	L	D	P	K	E	A	T	Y	L	R	W	I	A	V	.	.	.	.	.	.	G	K	T	X	E	E	I	A	D	V	E	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K	R	F	D	V	R	S	K	A	H	L
Template Known Secondary structure																T	T	.	.	.	.	.	.	T										T	T																		T		S	S
Template Predicted Secondary structure																		.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.							.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions