Job Description P31680 Confidence 44.54% Date Thu Jan 5 11:48:37 GMT 2012 Rank 52 Aligned Residues 78 % Identity 5% Template c3k7aM_ PDB info PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex Resolution 3.80 Å

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		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.								.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.
Query Sequence		R	A	V	L	Y	V	I	A	E	E	L	G	I	S	R	A	Q	F	D	Q	F	L	R	M	M	Q	G	G	A	Q	F	G	G	G	Y	Q	Q	Q	.	.	.	.	.	.	.	T	G	G	G	N	W	Q	Q	A	Q	R	G	P	T	L	E	D	A	C	N	V	L	G	V	K	P	T	D	D	A	T	T	I	K	R
Query Conservation																																								.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																																																																						.	.	.	.
Template Sequence		F	A	K	I	T	M	L	C	D	A	A	E	L	P	K	I	V	K	D	C	A	K	E	A	Y	K	L	C	H	D	E	K	T	L	K	G	K	S	M	E	S	I	M	A	A	S	I	L	I	G	C	R	R	A	E	V	A	R	T	F	K	E	I	Q	S	L	I	H	.	.	.	.	V	K	T	K	E	F	G	K
Template Known Secondary structure												T	T							T										S	S	S		S	S					S					T	T	T	T	T	T	T	S	B	T	T	B	S	S									S	S	S	.	.	.	.			S
Template Predicted Secondary structure																																																																						.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.
		224	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	R	K	L	M	S	E	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	N	I	M	K	N	I	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions