Return to main results Retrieve Phyre Job Id

Job DescriptionP77180
Confidence6.29%DateThu Jan 5 12:26:02 GMT 2012
Rank22Aligned Residues12
% Identity33%Templatec2xi1A_
PDB info PDB header:viral proteinChain: A: PDB Molecule:nef; PDBTitle: crystal structure of the hiv-1 nef sequenced from a patient's sample
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   10.........20.
Predicted Secondary structure 
Query SS confidence 











Query Sequence  DLIEILFYLKKK
Query Conservation 




 





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Template Conservation    

 






Template Sequence  GAVDLSFFLKEK
Template Known Secondary structure  T
Template Predicted Secondary structure 
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   83......90....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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