Job Description P36561 Confidence 3.13% Date Thu Jan 5 11:53:19 GMT 2012 Rank 24 Aligned Residues 192 % Identity 18% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.					.	80	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		W	A	M	L	S	F	I	T	R	L	P	V	P	R	R	W	S	Q	G	L	D	F	E	H	Y	S	R	G	I	I	T	F	P	L	I	G	L	L	L	G	A	I	S	G	L	V	F	M	V	L	Q	A	W	C	G	A	P	L	A	A	L	F	S	V	L	V	L	V	L	M	T	G	G	.	.	.	.	F	H	L
Query Conservation																																																																											.	.	.	.
Alig confidence																																																		.																									.	.	.	.
Template Conservation																																																		.
Template Sequence		L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	G	R	T	V	.	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D
Template Known Secondary structure							T					S	S								T											T											T		S	S				.
Template Predicted Secondary structure																																																		.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	L	A	D	T	C	D	G	V	F	S	A	R	S	R	D	R	M	L	E	I	M	R	D	S	R	L	G	T	H	G	G	L	A	L	I	F	V	V	L	A	K	I	L	V	L	S	E	L	A	L	R	G	E	S	I	L	A	S	L	A	A	A	C	A	V	S	R	G	T	A	A	L	L	M	Y	R	H	R
Query Conservation
Alig confidence														.															.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.															.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	I	I	N	I	P	N	L	I	E	Q	.	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	.	.	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	T	L	A	M	S	T	C	R
Template Known Secondary structure		T	T	S								G	G	.	G												T	S	.	.	S	S	T	T																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S
Template Predicted Secondary structure														.															.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400	.			.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.																	.	.	.	430	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.												.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	R	E	E	G	L	G	N	V	F	I	G	K	I	D	G	R	Q	T	C	V	T	L	G	L	A	A	I	F	A	A	V	L	L	.	.	.	.	.	.	.	.	.	.	.	P	G	M	H	G	V	A	A	M	V	V	T	M	V	A	I	F	I	L	G	Q	L	L	K	R	T	L	G
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.
Template Sequence		E	V	R	D	G	.	.	.	.	.	.	.	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K
Template Known Secondary structure		S	S	S	S	S	.	.	.	.	.	.	.		S	S		S	T	T																				S	S																																T
Template Predicted Secondary structure							.	.	.	.	.	.	.
Template SS confidence
		437	.	.	440	.								.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions