Return to main results Retrieve Phyre Job Id

Job DescriptionP13029
Confidence100.00%DateThu Jan 5 11:33:28 GMT 2012
Rank8Aligned Residues396
% Identity58%Templated1ub2a1
SCOP infoHeme-dependent peroxidases Heme-dependent peroxidases Catalase-peroxidase KatG
Resolution2.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60.........70.........80.........90.........100.........110.
Predicted Secondary structure 












































Query SS confidence 















































































Query Sequence  TTRDWWPNQLRVDLLNQHSNRSNPLGEDFDYRKEFSKLDYYGLKKDLKALLTESQPWWPADWGSYAGLFIRMAWHGAGTY
Query Conservation        
                                                     
 
   
  










Alig confidence 







































.






































Template Conservation                                          .                   
 
   
  





 


 
Template Sequence  STAEWWPKALNLDILSQHDRKTNPMGPDFNYQEEVQKLDA. ALKQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAAGTY
Template Known Secondary structure 
TTSS
TTS

GGGGS
S
TTT

S
TT

TTS
S.TTTT


TTS

GGG

TT
Template Predicted Secondary structure 


















.
















Template SS confidence 















































































   21........30.........40.........50.........60 .........70.........80.........90.........
 
   112.......120.........130.........140.........150.........160.........170.........180.........190.
Predicted Secondary structure 













































Query SS confidence 















































































Query Sequence  RSIDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWADLFILAGNVALENSGFRTFGFGAGREDVWEP
Query Conservation        

  





  
     
 

  
   
  

 
    

 



 


 



  


 
    

 
    
Alig confidence 















































































Template Conservation        

  

 

  

     
 

  
   
  

 
    

 



 


  


  


 
    

 
    
Template Sequence  RIADGRGGAGTGNQRFAPLNSWPDNTNLDKARRLLWPIKQKYGNKLSWADLIAYAGTIAYESMGLKTFGFAFGREDIWHP
Template Known Secondary structure 
TTT


SSTT
GGGSTTGGG
GGGTTTGGGS
TT






B




SS
Template Predicted Secondary structure 














































Template SS confidence 















































































   100.........110.........120.........130.........140.........150.........160.........170.........
 
   192.......200...... ...210.........220.........230.........240.........250.........260....
Predicted Secondary structure 














.......







































Query SS confidence 














. . . . . . .

























































Query Sequence  DLDVNWGDEKAWLTH. . . . . . . RHPEALAKAPLGATEMGLIYVNPEGPDHSGEPLSAAAAIRATFGNMGMNDEETVALIA
Query Conservation                 .......    
 
         
  
  



   

    
  

  
 





 
 




Alig confidence 














.......

























































Template Conservation        
                               


    
    

 
  
   

  
 
 


  






Template Sequence  EKDIYWGPEKEWFPPSTNPNSRYTGDRELENPLAAVTMGLIYVNPEGVDGNPDPLKTAHDVRVTFARMAMNDEETVALTA
Template Known Secondary structure 
TT



S
SSSS

SSSTT
STTT
TT

SSSTT
SS

TTSBTTB

TTT

Template Predicted Secondary structure 




























































Template SS confidence 















































































   180.........190.........200.........210.........220.........230.........240.........250.........
 
   265....270.........280.........290.........300.........310.........320.........330...... ...340...
Predicted Secondary structure 
























































.






Query SS confidence 







































































.






Query Sequence  GGHTLGKTHGAGPTSNVGPDPEAAPIEEQGLGWASTYGSGVGADAITSGLEVVWTQTPTQWSNYFFENLFKY. EWVQTRS
Query Conservation 








        
   
                         

  
 

 

  


 

  

  . 
     
Alig confidence 







































































.






Template Conservation 









  
  

                              

     
 

  


 

 


   

     
Template Sequence  GGHTVGKCHGNGNAALLGPEPEGADVEDQGLGWINKTQSGIGRNAVTSGLEGAWTPHPTQWDNGYFAVCSLNYDWELKKN
Template Known Secondary structure  TS

B
B
S
STTB


GGGS
GGGTT

S
B
SS

SGGG
BSSS

BBSSS
TTS
SSTTTTTTTSSS

Template Predicted Secondary structure 




























































Template SS confidence 















































































   260.........270.........280.........290.........300.........310.........320.........330.........
 
   344.....350........ .360.........370.........380.........390.........400.........410.........420.
Predicted Secondary structure 














..


























Query SS confidence 














. .






























































Query Sequence  PAGAIQFEAVDAPEI. . IPDPFDPSKKRKPTMLVTDLTLRFDPEFEKISRRFLNDPQAFNEAFARAWFKLTHRDMGPKSR
Query Conservation    
  
         ..  
         
 

 

 

  

     
  

 

  

  

 
  

     

   
Alig confidence 














..






























































Template Conservation    
  

                      
 

 

 

  

 
   
  

 
   
  


 

 


  


    
Template Sequence  PAGAWQWEPINPREEDLPVDVEDPSIRRNLVMTDADMAMKMDPEYRKISERFYQDPAYFADVFARAWFKLTHRDMGPKAR
Template Known Secondary structure  TTS
SS

GGGS
B
SS
TTSB

B
B
S
TTS
SGGG
Template Predicted Secondary structure 












































Template SS confidence 















































































   340.........350.........360.........370.........380.........390.........400.........410.........
 
   422......
Predicted Secondary structure 



Query SS confidence 






Query Sequence  YIGPEVP
Query Conservation         
Alig confidence 






Template Conservation    
    
Template Sequence  YIGPDVP
Template Known Secondary structure 
BSTT

Template Predicted Secondary structure 






Template SS confidence 






   420......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions