Job Description P13029 Confidence 100.00% Date Thu Jan 5 11:33:28 GMT 2012 Rank 35 Aligned Residues 223 % Identity 20% Template c3rrwB_ PDB info PDB header:plant protein Chain: B: PDB Molecule:thylakoid lumenal 29 kda protein, chloroplastic; PDBTitle: crystal structure of the tl29 protein from arabidopsis thaliana Resolution 2.50 Å

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		444	.	.	.	.	.	450	.	.	.	.	.	.		.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		N	P	T	E	Q	D	I	I	D	L	K	F	A	.	I	A	D	S	G	L	S	V	S	E	L	V	S	V	A	W	A	S	A	S	T	F	R	G	G	D	K	R	G	G	A	N	G	A	R	L	A	L	M	P	Q	R	D	W	D	V	N	A	A	A	V	R	A	L	P	V	L	E	K	I	Q	K	E	S	G	K
Query Conservation															.
Alig confidence															.																																			.
Template Conservation																																																		.
Template Sequence		S	E	F	Q	S	K	I	K	I	L	L	S	T	T	I	K	A	K	P	E	L	V	P	S	L	L	K	L	A	L	N	D	A	X	T	Y	D	K	A	T	K	S	G	G	A	N	G	S	.	I	R	F	S	S	E	L	S	R	A	E	N	E	G	L	S	D	G	L	S	L	I	E	E	V	K	K	E	I	D	S
Template Known Secondary structure																		T		G	G	G													T	T		B	T	T	T	T	B		S	S	S	S	G	.	G	G	S					T	S	G	G	G	T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
								523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	A	S	L	A	D	I	I	V	L	A	G	V	V	G	V	E	K	A	A	S	A	A	G	L	S	I	H	V	P	F	A	P	G	R	V	D	A	R	Q	D	Q	T	D	I	E	M	F	E	L	L	E	P	I	A	D	G	F	R	N	Y	R	A	R	L	D	V	S	T	T	E	S	L	L	I
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																						.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	K	G	G	P	I	S	Y	A	D	I	I	Q	L	A	G	Q	S	A	V	K	F	T	Y	L	A	.	.	.	.	.	S	A	I	R	K	C	G	G	N	E	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	L	L	Y	T	A	Y	G	S	A	G	Q	W
Template Known Secondary structure		T		S	S																								.	.	.	.	.						T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S		G	G	G
Template Predicted Secondary structure																													.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.																							.	130	.	.	.	.	.	.	.	.	.	140	.	.
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.		.	.	.	.	.				630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure																														.						.	.	.
Query SS confidence																														.						.	.	.
Query Sequence		D	K	A	Q	Q	L	T	L	T	A	P	E	M	T	A	L	V	G	G	M	R	V	L	G	A	N	F	D	.	G	S	K	N	G	.	.	.	V	F	T	D	R	V	G	V	L	S	N	D	F	F	V	N	L	L	D	M	R	Y	E	W	K	A	T	D	E	S	K	E	L	F	E	G	R	D	R	E	T	G	E
Query Conservation																														.						.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.						.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	F	D	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	R	S	D	A	T	E	A	D	P	E	G	R	V	P	Q	W	G	K	A	T	V	Q	E	X	K	D	K	F	I	A	V	G	L	G	P	R	Q	L	A	V	X	S	A	F	L	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S				S	S		S			G	G	G													T	T									T	G	G	G	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.																.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		673	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.						.	710	.	.	.	.	.	.	.	.	.	720	.		.	.	.
Predicted Secondary structure																																						.	.	.	.	.														.
Query SS confidence																																						.	.	.	.	.														.
Query Sequence		V	K	F	T	A	S	R	A	D	L	V	F	G	S	N	S	V	L	R	A	V	A	E	V	Y	A	S	S	D	A	H	E	K	F	V	K	.	.	.	.	.	D	F	V	A	A	W	V	K	V	M	N	L	D	.	R	F	D
Query Conservation																																						.	.	.	.	.														.
Alig confidence		.																												.	.							.	.	.	.	.														.
Template Conservation		.																												.	.
Template Sequence		.	G	P	D	Q	A	A	T	E	Q	L	L	A	T	D	P	Q	V	A	P	W	V	Q	K	Y	Q	R	S	.	.	R	E	T	V	S	Q	T	D	Y	E	V	D	L	I	T	A	F	T	K	L	S	C	L	G	Q	Q	I	N
Template Known Secondary structure		.	S	S										T	T	S	T	T	T											.	.			S	S	S																	T	T	T
Template Predicted Secondary structure		.																												.	.
Template SS confidence
			196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions