Job Description P13029 Confidence 100.00% Date Thu Jan 5 11:33:28 GMT 2012 Rank 5 Aligned Residues 687 % Identity 58% Template c1ub2A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:catalase-peroxidase; PDBTitle: crystal structure of catalase-peroxidase from synechococcus pcc 7942 Resolution 2.40 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	R	D	W	W	P	N	Q	L	R	V	D	L	L	N	Q	H	S	N	R	S	N	P	L	G	E	D	F	D	Y	R	K	E	F	S	K	L	D	Y	Y	G	L	K	K	D	L	K	A	L	L	T	E	S	Q	P	W	W	P	A	D	W	G	S	Y	A	G	L	F	I	R	M	A	W	H	G	A	G	T	Y
Query Conservation
Alig confidence																																									.
Template Conservation																																									.
Template Sequence		S	T	A	E	W	W	P	K	A	L	N	L	D	I	L	S	Q	H	D	R	K	T	N	P	M	G	P	D	F	N	Y	Q	E	E	V	Q	K	L	D	.	A	A	L	K	Q	D	L	Q	A	L	M	T	D	S	Q	D	W	W	P	A	D	W	G	H	Y	G	G	L	M	I	R	L	T	W	H	A	A	G	T	Y
Template Known Secondary structure			T	T	S	S		T	T	S			G	G	G	G	S		S		T	T	T			S		T	T								T	T	S		.	S	T	T								T	T				T	T	S			G	G	G															T	T
Template Predicted Secondary structure																																									.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	I	D	G	R	G	G	A	G	R	G	Q	Q	R	F	A	P	L	N	S	W	P	D	N	V	S	L	D	K	A	R	R	L	L	W	P	I	K	Q	K	Y	G	Q	K	I	S	W	A	D	L	F	I	L	A	G	N	V	A	L	E	N	S	G	F	R	T	F	G	F	G	A	G	R	E	D	V	W	E	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	A	D	G	R	G	G	A	G	T	G	N	Q	R	F	A	P	L	N	S	W	P	D	N	T	N	L	D	K	A	R	R	L	L	W	P	I	K	Q	K	Y	G	N	K	L	S	W	A	D	L	I	A	Y	A	G	T	I	A	Y	E	S	M	G	L	K	T	F	G	F	A	F	G	R	E	D	I	W	H	P
Template Known Secondary structure			T	T	T				S	S	T	T		G	G	G	S	T	T	G	G	G		G	G	G	T	T								T								G	G	G	S																	T	T								B						S	S
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.								.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.
Query Sequence		D	L	D	V	N	W	G	D	E	K	A	W	L	T	H	R	H	.	.	.	.	.	.	.	P	E	A	L	A	K	A	P	L	G	A	T	E	M	G	L	I	Y	V	N	P	E	G	P	D	H	S	G	E	P	L	S	A	A	A	A	I	R	A	T	F	G	N	M	G	M	N	D	E	E	T	V	A	L	I	A
Query Conservation																			.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	D	I	Y	W	G	P	E	K	E	W	F	P	P	S	T	N	P	N	S	R	Y	T	G	D	R	E	L	E	N	P	L	A	A	V	T	M	G	L	I	Y	V	N	P	E	G	V	D	G	N	P	D	P	L	K	T	A	H	D	V	R	V	T	F	A	R	M	A	M	N	D	E	E	T	V	A	L	T	A
Template Known Secondary structure			T	T					S		S	S	S	S			S	S	S	T	T		S			T	T	T				T	T			S	S	S	T	T		S	S			T	T	S	B	T	T	B																T	T	T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		G	G	H	T	L	G	K	T	H	G	A	G	P	T	S	N	V	G	P	D	P	E	A	A	P	I	E	E	Q	G	L	G	W	A	S	T	Y	G	S	G	V	G	A	D	A	I	T	S	G	L	E	V	V	W	T	Q	T	P	T	Q	W	S	N	Y	F	F	E	N	L	F	K	Y	.	E	W	V	Q	T	R	S
Query Conservation																																																																										.
Alig confidence																																																																										.
Template Conservation
Template Sequence		G	G	H	T	V	G	K	C	H	G	N	G	N	A	A	L	L	G	P	E	P	E	G	A	D	V	E	D	Q	G	L	G	W	I	N	K	T	Q	S	G	I	G	R	N	A	V	T	S	G	L	E	G	A	W	T	P	H	P	T	Q	W	D	N	G	Y	F	A	V	C	S	L	N	Y	D	W	E	L	K	K	N
Template Known Secondary structure					T	S			B		B		S		S	T	T	B				G	G	G	S		G	G	G	T	T			S		B		S	S			S	G	G	G		B	S	S	S			B	B	S	S	S		T	T	S		S	S	T	T	T	T	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		P	A	G	A	I	Q	F	E	A	V	D	A	.	.	P	E	I	I	P	D	P	F	D	P	S	K	K	R	K	P	T	M	L	V	T	D	L	T	L	R	F	D	P	E	F	E	K	I	S	R	R	F	L	N	D	P	Q	A	F	N	E	A	F	A	R	A	W	F	K	L	T	H	R	D	M	G	P	K	S	R
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence		P	A	G	A	W	Q	W	E	P	I	N	P	R	E	E	D	L	P	V	D	V	E	D	P	S	I	R	R	N	L	V	M	T	D	A	D	M	A	M	K	M	D	P	E	Y	R	K	I	S	E	R	F	Y	Q	D	P	A	Y	F	A	D	V	F	A	R	A	W	F	K	L	T	H	R	D	M	G	P	K	A	R
Template Known Secondary structure		T	T	S							S	S			G	G	G	S		B		S	S		T	T	S	B			B		B										S																															T	T	S		S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	G	P	E	V	P	K	E	D	L	I	W	Q	D	P	L	P	Q	P	I	Y	N	P	T	E	Q	D	I	I	D	L	K	F	A	I	A	D	S	G	L	S	V	S	E	L	V	S	V	A	W	A	S	A	S	T	F	R	G	G	D	K	R	G	G	A	N	G	A	R	L	A	L	M	P	Q	R	D	W	D
Query Conservation
Alig confidence																										.	.	.
Template Conservation																										.	.	.
Template Sequence		Y	I	G	P	D	V	P	Q	E	D	L	I	W	Q	D	P	I	P	A	G	N	R	N	Y	.	.	.	D	V	Q	A	V	K	D	R	I	A	A	S	G	L	S	I	S	E	L	V	S	T	A	W	D	S	A	R	T	Y	R	N	S	D	K	R	G	G	A	N	G	A	R	I	R	L	A	P	Q	K	D	W	E
Template Known Secondary structure			B	S	T	T			S	S			G	G	G										S	.	.	.												S																T	T		B	T	T	T	T	B		S	S	T	B	T	G	G	G	S	T	T	G	G	G		G
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.				.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
		502	.	.			.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		V	N	A	.	.	A	A	V	R	A	L	P	V	L	E	K	I	Q	K	E	S	G	K	A	S	L	A	D	I	I	V	L	A	G	V	V	G	V	E	K	A	A	S	A	A	G	L	S	I	H	V	P	F	A	P	G	R	V	D	A	R	Q	D	Q	T	D	I	E	M	F	E	L	L	E	P	I	A	D	G	F
Query Conservation					.	.
Alig confidence					.	.																		.
Template Conservation																								.
Template Sequence		G	N	E	P	D	R	L	P	K	V	L	A	V	L	E	G	I	S	A	A	T	G	.	A	T	V	A	D	V	I	V	L	A	G	N	V	G	V	E	Q	K	A	R	A	A	G	V	E	I	V	L	P	F	A	P	G	R	G	D	A	T	A	E	Q	T	D	T	E	S	F	A	V	L	E	P	I	H	D	A	I
Template Known Secondary structure		G	G		T	T																S	S	.																						T	T													B			S	T	T			T	T	T	T	G	G	G			S			G	G
Template Predicted Secondary structure																								.
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.		.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.
		580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	Y	R	A	R	L	D	V	S	T	T	E	S	L	L	I	D	K	A	Q	Q	L	T	L	T	A	P	E	M	T	A	L	V	G	G	M	R	V	L	G	A	N	F	D	G	S	K	N	G	V	F	T	D	R	V	G	V	L	S	N	D	F	F	V	N	L	L	D	M	R	Y	E	W	K	A	T	D	E	S
Query Conservation
Alig confidence																																																																													.	.
Template Conservation																																																																													.	.
Template Sequence		A	T	G	S	S	R	T	M	R	Q	R	L	K	N	C	C	L	I	A	T	Q	L	L	G	L	T	A	P	E	M	T	V	L	I	G	G	L	R	V	L	G	T	N	H	G	G	T	K	H	V	V	F	T	D	R	E	G	V	L	T	N	D	F	F	V	N	L	T	D	M	N	Y	L	W	K	.	.	P	A	G
Template Known Secondary structure		G	T			S	S			S	S														T																T	T			G	G	G			T	T				S		T	T	S			S							T		T	T					.	.			S
Template Predicted Secondary structure																																																																													.	.
Template SS confidence
		576	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650			.	.	.
		660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	L	F	E	G	R	D	R	E	T	G	E	V	K	F	T	A	S	R	A	D	L	V	F	G	S	N	S	V	L	R	A	V	A	E	V	Y	A	S	S	D	A	H	E	K	F	V	K	D	F	V	A	A	W	V	K	V	M	N	L	D	R	F	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	L	Y	E	I	C	D	R	K	T	N	Q	V	K	W	T	A	T	R	V	D	L	V	F	G	S	N	S	I	L	R	A	Y	S	E	L	Y	A	Q	D	D	N	K	E	K	F	V	R	D	F	V	A	A	W	T	K	V	M	N	A	D	R	F	D	L
Template Known Secondary structure		T	T							T	T	T													G	G	G	T	S											T	S	T	T																		T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.