Job Description P13029 Confidence 15.08% Date Thu Jan 5 11:33:28 GMT 2012 Rank 63 Aligned Residues 67 % Identity 16% Template c1no7A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:major capsid protein; PDBTitle: structure of the large protease resistant upper domain of2 vp5, the major capsid protein of herpes simplex virus-1 Resolution 2.90 Å

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		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		R	T	F	G	F	G	A	G	R	E	D	V	W	E	P	D	L	D	V	N	W	G	D	E	K	A	W	L	T	H	R	H	P	.	.	.	E	A	L	A	K	A	P	L	G	A	T	E	M	G	L	I	Y	V	N	P	E	G	P	D	H	S	G	E	P	L	S	A	A	A	A	I	R	A	T	F	G	N	M	G
Query Conservation																																			.	.	.
Alig confidence																				.	.														.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																				.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		P	A	F	D	F	F	V	G	V	A	D	V	E	L	P	G	G	D	.	.	V	P	P	A	G	P	G	E	I	Q	A	T	W	R	V	V	N	G	N	L	P	L	A	L	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	A	F	R	D	A	R	G	.	L	E	L	G	V	G	R	H
Template Known Secondary structure		T	T								S	S			T	T			S	.	.	S				S											S	G	G	G	S		T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.					T	T	S
Template Predicted Secondary structure																				.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.			.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.																		.	.	590	.	.	.	.	.	.		.	.	.	600	.	.	.	.
		254	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	D	E	E	T	V	A	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M	A	P	A	T	I	A	A	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		605	.	.	.	.	610	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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