Job Description P08178 Confidence 29.16% Date Thu Jan 5 11:00:42 GMT 2012 Rank 68 Aligned Residues 88 % Identity 22% Template c3qi7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution Resolution 1.86 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		A	L	V	G	R	I	K	G	V	V	K	K	T	R	R	P	E	V	M	.	.	.	G	G	L	G	G	F	G	A	L	C	A	L	P	Q	K	Y	R	E	P	V	L	V	S	G	T	D	G	V	G	T	K	L	R	L	A	M	D	L	K	R	H	D	T	I	G	I	D	L	V	A	M	C	V	N	D	L	V	V
Query Conservation																					.	.	.
Alig confidence										.	.	.	.	.							.	.	.																.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation										.	.	.	.	.																									.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Sequence		P	A	L	Q	K	V	K	E	.	.	.	.	.	K	R	P	E	I	I	T	I	S	A	P	X	G	D	D	K	N	Q	L	S	Q	F	V	D	.	.	.	.	.	V	N	L	G	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	E	R	G	K	V	L	A	E	R	S	K	E	.	.	.	.
Template Known Secondary structure										.	.	.	.	.			T	T	S					S	S			S									S	S	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.																									.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.						.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.						.	.	160	.	.	.															.	.	.	.	.	.	170	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	A	E	P	L	F	F	L	D	Y	Y	A	T	G	K	L	D	V	D	T	A	S	A	V	I	S	G	I	A	E	G	C	L	Q	S	G	C	S	L	V
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		X	G	A	K	.	.	A	F	I	H	Y	A	S	T	D	D	L	K	D	V	N	I	A	K	R	L	E	X	I	K	E	T	C	K	N	I	G	L	P	F	V
Template Known Secondary structure		T	T		S	.	.								T	T	G	G	G	S																	T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		178	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions