Job Description P08178 Confidence 100.00% Date Thu Jan 5 11:00:42 GMT 2012 Rank 17 Aligned Residues 280 % Identity 15% Template c1vqvB_ PDB info PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus Resolution 2.65 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	A	L	V	G	R	I	K	G	V	V	K	K	T	R	R	P	E	V	M	G	G	L	G	G	F	G	A	L	C	A	L	P	Q	K	Y	R	E	P	V	L	V	S	G	T	D	G	V	G	T	K	L	R	L	A	M	D	L	K	R	H	D	T	I	G	I	D	L	V	A	M	C	V	N	D	L	V	V	Q
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																			.
Template Conservation																.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																			.
Template Sequence		E	F	G	L	I	D	L	I	K	K	T	L	E	S	.	.	.	.	.	.	.	.	K	V	I	D	D	T	A	P	V	E	K	.	.	.	.	.	.	.	.	L	L	L	T	T	D	V	L	N	E	G	V	H	F	L	R	S	Y	.	I	P	E	A	V	G	W	K	A	I	S	V	N	V	S	D	V	I	A	N
Template Known Secondary structure														T		.	.	.	.	.	.	.	.	T	T				B						.	.	.	.	.	.	.	.										B	T	T	T	B		T	T	S	.																			T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																			.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.									.	.	.	.	.	.	.	.	30	.	.									.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		G	A	E	P	L	F	F	L	D	Y	Y	A	T	G	K	L	.	D	V	D	T	A	S	A	V	I	S	G	I	A	E	G	C	L	Q	S	G	C	S	L	V	G	G	E	T	A	E	M	P	G	M	Y	H	G	E	D	Y	D	V	A	G	F	C	V	G	V	V	E	K	S	E	I	I	D	G	S	K	V	S	D
Query Conservation																		.
Alig confidence																		.																																			.	.	.	.	.	.											.	.
Template Conservation																																																					.	.	.	.	.	.											.	.
Template Sequence		G	G	L	P	K	W	A	L	I	S	L	N	L	P	E	D	L	E	V	S	Y	V	E	R	F	Y	I	G	V	K	R	A	C	E	F	Y	K	C	E	V	V	G	G	N	I	S	K	S	E	K	I	.	.	.	.	.	.	G	I	S	V	F	L	V	G	E	T	.	.	E	R	F	V	G	R	D	G	A	R	L
Template Known Secondary structure		T														T	T	S																				T												S	S		.	.	.	.	.	.											.	.	S	S				S	S				T
Template Predicted Secondary structure																																																					.	.	.	.	.	.											.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	V	L	I	A	L	G	S	S	G	P	H	S	N	G	Y	S	L	V	R	K	I	L	E	V	S	G	C	D	P	Q	T	T	E	L	D	G	K	P	L	A	D	H	L	L	A	P	T	R	I	Y	V	K	S	V	L	E	L	I	E	K	V	D	V	H	A	I	A	H	L	T	G	G	G	F	W	E	N	I
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.																																	.
Template Sequence		G	D	S	V	F	V	S	G	T	L	G	D	S	R	A	G	L	E	L	L	L	X	E	K	E	E	Y	E	P	F	E	.	.	.	.	.	.	.	.	.	.	L	A	L	I	Q	R	H	L	R	P	T	A	R	I	D	Y	V	K	H	I	Q	K	Y	A	N	A	S	X	D	I	S	D	.	G	L	V	A	D	A
Template Known Secondary structure		T							S		S	S											T	T		S	S						.	.	.	.	.	.	.	.	.	.									S					G	G	G									S							S	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.																																	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.											.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.
		258	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		P	R	V	L	P	.	D	N	T	Q	A	V	I	D	E	S	S	W	Q	W	P	E	V	F	N	W	L	Q	T	A	G	N	V	E	H	H	E	M	Y	R	T	F	N	C	G	V	G	M	I	I	A	L	P	A	P	E	V	D	K	A	L	A	L	L	N	A	N	G	E	N	A	W	K	I	G	I	I	K	A	S
Query Conservation							.
Alig confidence							.																																																							.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.
Template Sequence		N	H	L	A	Q	R	S	G	V	K	I	E	I	L	S	E	K	L	P	L	S	N	E	L	K	X	Y	C	E	K	Y	G	K	N	P	I	E	Y	A	L	F	G	G	E	D	Y	Q	L	L	F	T	H	P	K	E	R	W	N	P	F	.	.	.	.	.	.	.	.	L	D	X	T	E	I	G	R	V	E	E	G
Template Known Secondary structure								T	T							G	G	G	S													T	T									S													G	G	G			S	S	.	.	.	.	.	.	.	.	S										S	S
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.									.	.	.	280	.	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	E	Q	R	V	V	I	E
Query Conservation
Alig confidence				.	.	.
Template Conservation				.	.	.
Template Sequence		E	G	.	.	.	V	F	V	D
Template Known Secondary structure		S		.	.	.				T
Template Predicted Secondary structure				.	.	.
Template SS confidence
		289	290				.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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