Job Description P39099 Confidence 99.92% Date Thu Jan 5 11:58:15 GMT 2012 Rank 25 Aligned Residues 185 % Identity 17% Template d1lvmb_ SCOP info Trypsin-like serine proteases Trypsin-like serine proteases Viral proteases Resolution 1.80

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		L	E	K	V	L	P	A	V	V	S	V	R	V	E	G	T	A	S	Q	G	Q	K	I	P	E	E	F	K	K	F	F	G	D	D	L	P	D	Q	P	A	Q	P	F	E	G	L	G	S	G	V	I	I	N	A	S	K	G	Y	V	L	T	N	N	H	V	I	N	Q	A	Q	.	K	I	S	I	Q	L	N	D	G
Query Conservation																																																																								.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		Y	N	P	I	S	S	T	I	C	H	L	T	N	E	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	T	T	S	L	Y	G	I	G	F	.	G	P	F	I	I	T	N	K	H	L	F	R	R	N	N	G	T	L	L	V	Q	S	L	H	G
Template Known Secondary structure							T	T									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T											.	T	T						G	G	G	G	S			S								T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.																												.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
						125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																																					.
Query SS confidence		.	.	.	.																																																																					.
Query Sequence		.	.	.	.	R	E	F	D	A	K	L	I	G	S	D	D	Q	S	D	I	A	L	L	Q	I	Q	N	P	S	K	L	T	Q	I	A	I	A	D	S	D	K	L	R	V	G	D	F	A	V	A	V	G	N	P	F	G	L	G	Q	T	A	T	S	G	I	V	S	A	L	G	R	S	.	G	L	N	L	E	G	L
Query Conservation		.	.	.	.																																																																					.
Alig confidence		.	.	.	.																						.																															.	.	.	.	.												.
Template Conservation																											.																															.	.	.	.	.
Template Sequence		V	F	K	V	K	N	T	T	T	L	Q	Q	H	L	I	D	G	R	D	M	I	I	I	R	M	.	P	K	D	F	P	P	F	P	Q	K	L	K	F	R	E	P	Q	R	E	E	R	I	C	L	V	T	T	N	F	Q	.	.	.	.	.	T	K	S	M	S	S	M	V	S	D	T	S	C	T	F	P	S	S	D
Template Known Secondary structure						S		G	G	G	S						T	T	S	S							.		T	T	S					S				B					T	T											S	.	.	.	.	.		G	G	G														T	T
Template Predicted Secondary structure																											.																															.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.						.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		E	N	F	I	Q	T	D	A	S	I	N	R	G	N	S	G	G	A	L	L	N	L	N	.	G	E	L	I	G	I	N	T	A	I	L	A	P	G	G	G	S	V	G	I	G	F	A	I	P	S	N	M	A	R	T	L	A	Q	Q	L	I	D	F	G	E	I	K	R	G	L
Query Conservation																									.
Alig confidence																									.													.	.																					.	.
Template Conservation																																						.	.																					.	.
Template Sequence		G	I	F	W	K	H	W	I	Q	T	K	D	G	Q	C	G	S	P	L	V	S	T	R	D	G	F	I	V	G	I	H	S	A	S	N	F	.	.	T	N	T	N	N	Y	F	T	S	V	P	K	N	F	M	E	L	L	T	N	.	.	Q	E	A	Q	Q	W	V	S	G	W
Template Known Secondary structure		T	T										T	T		T	T						T	T	T												T	.	.	T	S	S	S								T	T								.	.	G	G	G						S
Template Predicted Secondary structure																																						.	.																					.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions