Job Description P39099 Confidence 100.00% Date Thu Jan 5 11:58:15 GMT 2012 Rank 7 Aligned Residues 304 % Identity 37% Template c3qo6B_ PDB info PDB header:photosynthesis Chain: B: PDB Molecule:protease do-like 1, chloroplastic; PDBTitle: crystal structure analysis of the plant protease deg1 Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	A	P	M	L	E	K	V	L	P	A	V	V	S	V	R	V	E	G	T	A	S	Q	G	Q	K	I	P	E	E	F	K	K	F	F	G	D	D	L	P	D	Q	P	A	Q	P	F	E	G	L	G	S	G	V	I	I	N	A	S	K	G	Y	V	L	T	N	N	H	V	I	N	Q	A	Q	K	I	S	I	Q
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Sequence		A	T	V	R	L	F	Q	E	N	T	P	S	V	V	Y	I	T	N	L	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	D	A	F	T	L	D	V	L	E	V	P	Q	G	S	G	S	G	F	V	W	D	.	K	Q	G	H	I	V	T	N	Y	H	V	I	R	G	A	S	D	L	R	V	T
Template Known Secondary structure											G	G	G										.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T		S																.	T	T	T										T	T		S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140															.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.				.	.	.	.	.
Predicted Secondary structure																															.																																											.	.	.
Query SS confidence																															.																																											.	.	.
Query Sequence		L	N	D	G	R	E	F	D	A	K	L	I	G	S	D	D	Q	S	D	I	A	L	L	Q	I	Q	N	P	S	.	K	L	T	Q	I	A	I	A	D	S	D	K	L	R	V	G	D	F	A	V	A	V	G	N	P	F	G	L	G	Q	T	A	T	S	G	I	V	S	A	L	G	R	.	.	.	S	G	L	N	L
Query Conservation																															.																																											.	.	.
Alig confidence																															.																																											.	.	.
Template Conservation
Template Sequence		L	A	D	Q	T	T	F	D	A	K	V	V	G	F	D	Q	D	K	D	V	A	V	L	R	I	D	A	P	K	N	K	L	R	P	I	P	V	G	V	S	A	D	L	L	V	G	Q	K	V	F	A	I	G	N	P	F	G	L	D	H	T	L	T	T	G	V	I	S	G	L	R	R	E	I	S	S	A	A	T	G
Template Known Secondary structure			T	T	S												T	T	T	T										G	G	G						B			S	T	T			T	T									G	G	G		T	T																	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	L	E	N	F	I	Q	T	D	A	S	I	N	R	G	N	S	G	G	A	L	L	N	L	N	G	E	L	I	G	I	N	T	A	I	L	A	P	G	G	G	S	V	G	I	G	F	A	I	P	S	N	M	A	R	T	L	A	Q	Q	L	I	D	F	G	E	I	K	R	G	L	L	G	I	K	G	T	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	P	I	Q	D	V	I	Q	T	D	A	A	I	N	P	G	N	S	G	G	P	L	L	D	S	S	G	T	L	I	G	I	N	T	A	I	Y	S	P	S	G	A	S	S	G	V	G	F	S	I	P	V	D	T	V	G	G	I	V	D	Q	L	V	R	F	G	K	V	T	R	P	I	L	G	I	K	F	A	P	D
Template Known Secondary structure												S				T	T		T	T						T	T	S												S	S	S	S			S																					S	S													S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310												.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	D	I	A	K	A	F	N	L	D	V	Q	R	G	A	F	V	S	E	V	L	P	G	S	G	S	A	K	A	G	V	K	A	.	.	.	.	.	.	.	.	.	.	.	G	D	I	I	T	S	L	N	G	K	P	L	N	S	F	A	E	L	R	S	R	I	A	T	T	E	P	G	T	K	V	K	L	G	L
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.
Template Sequence		Q	S	V	.	.	.	.	.	E	Q	L	G	V	S	G	V	L	V	L	D	A	P	P	S	G	P	A	G	K	A	G	L	Q	S	T	K	R	D	G	Y	G	R	L	V	L	G	D	I	I	T	S	V	N	G	T	K	V	S	N	G	S	D	L	Y	R	I	L	D	Q	C	K	V	G	D	E	V	T	V	E	V
Template Known Secondary structure		S	T	T	.	.	.	.	.	G	G	G	T			S								T	T	S					T	T								S	S	S												T	T				S	S									T	T			T	T
Template Predicted Secondary structure					.	.	.	.	.
Template SS confidence
		345	.	.						.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	N	G	K	P	L	E	V	E	V	T	L	D	T	S	T	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	G	D	H	K	E	K	I	S	V	T	L	E	P	K	P	D	E
Template Known Secondary structure				S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions