Job Description P39099 Confidence 99.12% Date Thu Jan 5 11:58:15 GMT 2012 Rank 134 Aligned Residues 81 % Identity 23% Template c3qglD_ PDB info PDB header:protein binding Chain: D: PDB Molecule:sorting nexin-27; PDBTitle: crystal structure of pdz domain of sorting nexin 27 (snx27) in complex2 with the eseskv peptide corresponding to the c-terminal tail of girk3 Resolution 3.31 Å

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		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.													.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.			.	.	.	.	.	.	430
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Query Sequence		S	A	S	A	E	M	I	T	P	A	L	E	G	A	T	L	S	D	G	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	K	D	G	G	K	G	I	K	I	D	E	V	V	K	G	S	P	A	A	Q	A	G	L	Q	K	D	D	V	I	I	G	V	N	R	D	R	V	N	.	.	S	I	A	E	M	R	K
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Template Conservation
Template Sequence		S	P	R	V	V	R	I	V	K	S	E	S	G	Y	G	F	N	V	R	G	Q	V	S	E	G	G	Q	L	R	S	I	N	G	E	L	Y	A	P	L	Q	H	V	S	A	V	L	P	G	G	A	A	D	R	A	G	V	R	K	G	D	R	I	L	E	V	N	G	V	N	V	E	G	A	T	H	K	Q	V	V	D
Template Known Secondary structure											B	T	T	B									S	S	S								T	T				S										T	T	S	T					T			T	T							T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	A	A	K	P	A	I	I	A	L	Q	I	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	R	A	G	E	K	E	L	I	L	T	V	L	S
Template Known Secondary structure							S	S
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions