Job Description P39099 Confidence 99.95% Date Thu Jan 5 11:58:15 GMT 2012 Rank 21 Aligned Residues 184 % Identity 16% Template c3mmgB_ PDB info PDB header:viral protein, hydrolase Chain: B: PDB Molecule:nuclear inclusion protein a; PDBTitle: crystal structure of tobacco vein mottling virus protease Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		E	K	V	L	P	A	V	V	S	V	R	V	E	G	T	A	S	Q	G	Q	K	I	P	E	E	F	K	K	F	F	G	D	D	L	P	D	Q	P	A	Q	P	F	E	G	L	G	S	G	V	I	I	N	A	S	K	G	Y	V	L	T	N	N	H	V	I	.	N	Q	A	Q	K	I	S	I	Q	L	N	D	G	R
Query Conservation																																																																			.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.												.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Sequence		N	P	I	S	A	C	V	C	L	L	E	N	S	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	S	E	R	L	F	G	I	G	F	.	.	.	G	P	Y	I	I	A	N	Q	H	L	F	R	R	N	N	G	E	L	T	I	K	T	M	H	G	E
Template Known Secondary structure						T	T									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T											.	.	.	T	T						G	G	G	G	S	S			S							T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.																										.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		126	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		E	F	D	A	K	L	.	.	.	.	I	G	S	D	D	Q	S	D	I	A	L	L	Q	I	Q	N	P	S	K	L	T	Q	I	A	I	A	D	S	D	K	L	R	V	G	D	F	A	V	A	V	G	N	P	F	G	L	G	Q	T	A	T	S	G	I	V	S	A	L	G	R	S	G	L	N	L	E	G	L	E	N
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.															.																																												.	.	.	.
Template Conservation																										.																																												.	.	.	.
Template Sequence		F	A	V	A	N	S	T	Q	L	Q	M	K	P	V	E	G	R	D	I	I	V	I	K	M	.	A	K	D	F	P	P	F	P	Q	K	L	K	F	R	Q	P	T	I	K	D	R	V	C	M	V	S	T	N	F	Q	Q	K	S	V	S	S	L	V	S	E	S	S	H	.	.	.	.	I	V	H	K	E	D	T	S
Template Known Secondary structure					S		G	G	G	S						T	B	S	S							.		T	T	S					S				B					T	T										S	S		G	G	G								B		.	.	.	.					T	T	S	S
Template Predicted Secondary structure																										.																																												.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		F	I	Q	T	D	A	S	I	N	R	G	N	S	G	G	A	L	L	N	L	N	.	G	E	L	I	G	I	N	T	A	I	L	A	P	G	G	G	S	V	G	I	G	F	A	I	P	S	N	M	A	R	T	L	A	Q	Q	L	I	D	F	G	E	I	K	R	G	L
Query Conservation																							.
Alig confidence																							.													.	.																									.	.	.
Template Conservation																																				.	.																									.	.	.
Template Sequence		F	W	Q	H	W	I	T	T	K	D	G	Q	A	G	S	P	L	V	S	I	I	D	G	N	I	L	G	I	H	S	L	T	H	T	.	.	T	N	G	S	N	Y	F	V	E	F	P	E	K	F	V	A	T	Y	L	D	A	A	D	G	.	.	.	W	C	K	N	W
Template Known Secondary structure											T	T		T	T						T	T	T												T	.	.	T	T										T	T						T	S			S	S	.	.	.		B	S	S
Template Predicted Secondary structure																																				.	.																									.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions