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Job DescriptionP39099
Confidence98.40%DateThu Jan 5 11:58:15 GMT 2012
Rank250Aligned Residues179
% Identity16%Templatec3h7tB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:group 3 allergen smipp-s yvt004a06; PDBTitle: crystal structure of scabies mite inactivated protease paralogue s-d12 (smipp-s-d1)
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   51........60.........70.........80.........90.........100.........110.........120. ..
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Query Sequence  PAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQL. . . . . . . ND
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Template Sequence  PWAVGVLV. . . . . . . . . . . . . . . . . . . . . . . . . . . . DEKPFCGGSILTAN. . FVITAAQCVDGTKPSDISIHYGSSYRTT
Template Known Secondary structure  TT............................TTS

SSSS..
TT

GGGS
SBSSS
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   13......20 .........30.... .....40.........50.........60..
 
   124.....130...... ...140.........150. ........160.........170...... ...180....
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Query Sequence  GREFDAKLIGSDD. . . . . . . QSDIALLQIQNPSKL. . . . . TQIAIADSDKLRVGDFAVAVGNPFG. . . . . . . LGQTATSG
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Template Sequence  KGTSVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEA
Template Known Secondary structure  SS
S
BTTTTBT

SS




SSS



B


TT



TT



SSTT




SB
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   63......70.........80.........90.........100.........110.........120.........130.........140..
 
   185....190 .........200.........210.........220.........230.........240.........250..
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Query Sequence  IVSALG. . . . . . . . . . . . RSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMAR
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Template Sequence  NFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEETYIGYGDAGDPAVQ. NGTLVGVASYISSMPSEFPSV. . FLRVGYYV
Template Known Secondary structure 
TTT
GGG
STT



B

TT
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   143......150.........160.........170.........180.........190 .........200.........210. ........
 
   253......260..
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Query Sequence  TLAQQLIDFG
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Template Sequence  LDIKDIISGK
Template Known Secondary structure  TT
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   222.......230.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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