Job Description P39099 Confidence 97.56% Date Thu Jan 5 11:58:15 GMT 2012 Rank 276 Aligned Residues 169 % Identity 18% Template c2zchP_ PDB info PDB header:immune system Chain: P: PDB Molecule:prostate-specific antigen; PDBTitle: crystal structure of human prostate specific antigen2 complexed with an activating antibody Resolution 2.83 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.								.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.								.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Query Sequence		G	S	G	V	I	I	N	A	S	K	G	Y	V	L	T	N	N	H	V	I	N	Q	A	Q	K	I	S	I	Q	L	N	.	.	.	.	.	.	.	D	G	R	E	F	D	A	K	L	I	G	S	D	D	Q	S	.	.	.	.	.	.	.	D	I	A	L	L	Q	I	Q	N	P	S	K	L	T	Q	I	A	I	A
Query Conservation																																	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Alig confidence											.	.																					.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation											.	.
Template Sequence		C	G	G	V	L	V	H	P	Q	.	.	W	V	L	T	A	A	H	C	I	R	N	K	S	V	I	L	L	G	R	H	S	L	F	H	P	E	D	T	G	Q	V	F	Q	V	S	H	S	F	P	H	P	L	Y	D	M	S	L	L	K	N	R	F	L	R	P	G	D	D	S	S	H	D	L	M	L	L	R	L	S
Template Known Secondary structure									T	T	.	.						G	G	G			S	S						S		S	B	S	S	S			T	T													T	T	S		G	G	G	G	T	S	S	S			T	T		B		T	T								S
Template Predicted Secondary structure											.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	S	D	K	L	R	V	G	D	F	A	V	A	V	G	N	P	F	G	L	G	Q	T	A	T	S	G	I	V	S	A	L	G	R	S	G	L	N	L	E	G	L	E	N	F	I	Q	T	D	A	S	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	P	A	E	L	T	D	A	V	K	V	M	D	L	P	T	Q	E	P	A	L	G	T	T	C	Y	A	S	G	W	G	S	I	E	P	E	E	F	L	T	P	K	K	L	Q	C	V	D	L	H	V	I	S	N	D	V	C	A	Q	V	H	P	Q	K	V	T	K	F	M	L	C	A	G	R	W	T	G	G	K	S
Template Known Secondary structure		S						S	S								S	S				T	T								S			S	S	S	S	S					S	B																			S	S	B			T	T							T	T		S		B
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
				211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	G	N	S	G	G	A	L	L	N	L	N	G	E	L	I	G	I	N	T	A	I	L	A	P	G	G	G	S	V	G	I	G	F	A	I	P	S	N	M	A	R	T	L	A	Q	Q	L	I	D	F	G	E
Query Conservation		.	.
Alig confidence		.	.											.
Template Conservation														.
Template Sequence		T	C	S	G	D	S	G	G	P	L	V	C	.	N	G	V	L	Q	G	I	T	S	W	G	S	E	P	C	A	L	P	E	R	P	S	L	Y	T	K	V	V	H	Y	R	K	W	I	K	D	T	I	V	A	N	P
Template Known Secondary structure				T	T		T	T					S	.	S	S	S										S	S	T	T		T	T								G	G	G	G										T
Template Predicted Secondary structure														.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions