Job Description P39099 Confidence 98.96% Date Thu Jan 5 11:58:15 GMT 2012 Rank 217 Aligned Residues 87 % Identity 14% Template c2yt7A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the pdz domain of amyloid beta a42 precursor protein-binding family a member 3 Resolution UNK

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		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.		.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.			.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																																																			.																	.	.
Query SS confidence																																																			.																	.	.
Query Sequence		D	T	S	T	S	S	S	A	S	A	E	M	I	T	P	A	L	E	G	A	T	L	S	D	G	Q	L	K	D	G	G	K	G	I	K	I	D	E	V	V	K	G	S	P	A	A	Q	A	G	.	L	Q	K	D	D	V	I	I	G	V	N	R	D	R	V	N	.	.	S	I	A	E	M	R	K	V	L	A	A	K
Query Conservation																																																			.																	.	.
Alig confidence																																																			.																	.	.
Template Conservation
Template Sequence		S	G	D	N	C	R	E	V	H	L	E	K	R	R	G	E	G	L	G	V	A	L	V	E	S	G	W	G	S	L	L	P	T	A	V	I	A	N	L	L	H	G	G	P	A	E	R	S	G	A	L	S	I	G	D	R	L	T	A	I	N	G	T	S	L	V	G	L	P	L	A	A	C	Q	A	A	V	R	E	T
Template Known Secondary structure		T	T												T	T													S	S	S	S										T	T	S	T	T	G	G	G	S	S			T	T							S	S		B		T	T	S												T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		436	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	I	I	A	L	Q	I	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	S	Q	T	S	V	T	L	S	I
Template Known Secondary structure		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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